Hb_002248_100

Information

Type -
Description -
Location Contig2248: 96213-100093
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41060g
description hypothetical protein
nr
ID CAN74977.1
description hypothetical protein VITISV_027197 [Vitis vinifera]
swissprot
ID Q9LJQ9
description Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1
trembl
ID A5BT07
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_100 0.0 - - hypothetical protein VITISV_027197 [Vitis vinifera]
2 Hb_000172_420 0.0676616075 - - 60S ribosomal protein L30, putative [Ricinus communis]
3 Hb_000635_080 0.0682881776 - - 60S ribosomal protein L17A [Hevea brasiliensis]
4 Hb_007943_140 0.0776474926 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
5 Hb_006588_080 0.0912708525 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
6 Hb_010827_020 0.0914339025 - - 60S ribosomal protein L17B [Hevea brasiliensis]
7 Hb_172221_010 0.0924431685 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
8 Hb_001017_070 0.0929998757 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000963_030 0.097941995 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
10 Hb_026398_010 0.1006932334 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
11 Hb_000780_210 0.1021450125 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
12 Hb_008948_050 0.1045704446 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
13 Hb_000062_390 0.1048714653 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
14 Hb_000789_110 0.1080845349 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
15 Hb_000881_080 0.1089755511 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002316_120 0.1093183088 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
17 Hb_001832_120 0.1101880769 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
18 Hb_004735_050 0.1106598521 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_000329_020 0.1119462365 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
20 Hb_000085_330 0.1131380116 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]

Gene co-expression network

sample Hb_002248_100 Hb_002248_100 Hb_000172_420 Hb_000172_420 Hb_002248_100--Hb_000172_420 Hb_000635_080 Hb_000635_080 Hb_002248_100--Hb_000635_080 Hb_007943_140 Hb_007943_140 Hb_002248_100--Hb_007943_140 Hb_006588_080 Hb_006588_080 Hb_002248_100--Hb_006588_080 Hb_010827_020 Hb_010827_020 Hb_002248_100--Hb_010827_020 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000172_420--Hb_000635_080 Hb_000270_720 Hb_000270_720 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050 Hb_001377_380 Hb_001377_380 Hb_000635_080--Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_000635_080--Hb_000780_210 Hb_000635_080--Hb_006588_080 Hb_004545_130 Hb_004545_130 Hb_000635_080--Hb_004545_130 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120 Hb_000963_030 Hb_000963_030 Hb_007943_140--Hb_000963_030 Hb_001017_070 Hb_001017_070 Hb_007943_140--Hb_001017_070 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_006588_080--Hb_002316_120 Hb_001832_120 Hb_001832_120 Hb_010827_020--Hb_001832_120 Hb_010827_020--Hb_000635_080 Hb_010827_020--Hb_000780_210 Hb_001700_020 Hb_001700_020 Hb_010827_020--Hb_001700_020 Hb_183086_040 Hb_183086_040 Hb_010827_020--Hb_183086_040 Hb_000329_020 Hb_000329_020 Hb_172221_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_172221_010--Hb_000042_260 Hb_172221_010--Hb_026398_010 Hb_002909_130 Hb_002909_130 Hb_172221_010--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_002588_010 Hb_002588_010 Hb_172221_010--Hb_002588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5674 7.018 7.69137 12.1234 12.1712 12.6792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.6796 108.019 25.3976 22.9429 5.74329

CAGE analysis