Hb_089100_020

Information

Type -
Description -
Location Contig89100: 5957-12032
Sequence    

Annotation

kegg
ID rcu:RCOM_0562930
description cyclin A, putative
nr
ID XP_012078272.1
description PREDICTED: cyclin-A1-1 [Jatropha curcas]
swissprot
ID Q9C6Y3
description Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1
trembl
ID A0A067KCU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12115 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-a1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61653: 6066-7030 , PASA_asmbl_61654: 7043-11931 , PASA_asmbl_61655: 7976-9650 , PASA_asmbl_61656: 7058-9360 , PASA_asmbl_61657: 8781-11931 , PASA_asmbl_61658: 8781-9360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089100_020 0.0 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
2 Hb_001785_040 0.1019641226 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
3 Hb_000696_220 0.1039122036 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
4 Hb_000853_240 0.1212793939 - - -
5 Hb_003198_010 0.1236273796 - - Valine--tRNA ligase [Gossypium arboreum]
6 Hb_000191_020 0.1241118602 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003181_050 0.1241589688 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
8 Hb_001604_030 0.127769356 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
9 Hb_001386_050 0.1316152698 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
10 Hb_002759_230 0.1329970277 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
11 Hb_002603_150 0.1333095325 - - PREDICTED: protein yippee-like [Jatropha curcas]
12 Hb_017862_010 0.1342103416 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
13 Hb_000805_130 0.1357966777 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007575_070 0.137907102 - - Histone H3.2 [Glycine soja]
15 Hb_089100_030 0.1387563585 - - -
16 Hb_000544_110 0.1396527456 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
17 Hb_001102_250 0.1398025935 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
18 Hb_000175_130 0.1398508067 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
19 Hb_000035_430 0.1421231315 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
20 Hb_000384_130 0.142848392 - - uridylate kinase plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_089100_020 Hb_089100_020 Hb_001785_040 Hb_001785_040 Hb_089100_020--Hb_001785_040 Hb_000696_220 Hb_000696_220 Hb_089100_020--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_089100_020--Hb_000853_240 Hb_003198_010 Hb_003198_010 Hb_089100_020--Hb_003198_010 Hb_000191_020 Hb_000191_020 Hb_089100_020--Hb_000191_020 Hb_003181_050 Hb_003181_050 Hb_089100_020--Hb_003181_050 Hb_001604_030 Hb_001604_030 Hb_001785_040--Hb_001604_030 Hb_000260_200 Hb_000260_200 Hb_001785_040--Hb_000260_200 Hb_002603_150 Hb_002603_150 Hb_001785_040--Hb_002603_150 Hb_032969_030 Hb_032969_030 Hb_001785_040--Hb_032969_030 Hb_000012_100 Hb_000012_100 Hb_001785_040--Hb_000012_100 Hb_000696_220--Hb_000853_240 Hb_000696_220--Hb_003198_010 Hb_000032_350 Hb_000032_350 Hb_000696_220--Hb_000032_350 Hb_000963_030 Hb_000963_030 Hb_000696_220--Hb_000963_030 Hb_001386_050 Hb_001386_050 Hb_000696_220--Hb_001386_050 Hb_000853_240--Hb_001386_050 Hb_000853_240--Hb_003198_010 Hb_000172_420 Hb_000172_420 Hb_000853_240--Hb_000172_420 Hb_000853_240--Hb_000963_030 Hb_000805_130 Hb_000805_130 Hb_000853_240--Hb_000805_130 Hb_003198_010--Hb_001386_050 Hb_003198_010--Hb_003181_050 Hb_003198_010--Hb_000032_350 Hb_000035_430 Hb_000035_430 Hb_000191_020--Hb_000035_430 Hb_024714_060 Hb_024714_060 Hb_000191_020--Hb_024714_060 Hb_000896_120 Hb_000896_120 Hb_000191_020--Hb_000896_120 Hb_000191_020--Hb_001604_030 Hb_001268_080 Hb_001268_080 Hb_000191_020--Hb_001268_080 Hb_003181_050--Hb_001386_050 Hb_003181_050--Hb_001785_040 Hb_003181_050--Hb_032969_030 Hb_002802_020 Hb_002802_020 Hb_003181_050--Hb_002802_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1602 1.70212 3.70225 3.27762 2.8543 3.37204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5297 37.4442 17.9922 1.60564 1.78068

CAGE analysis