Hb_002802_020

Information

Type -
Description -
Location Contig2802: 37635-39867
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021573mg
description hypothetical protein
nr
ID XP_012082941.1
description PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
swissprot
ID Q9LFP6
description Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=3 SV=1
trembl
ID A0A067LL56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09724 PE=4 SV=1
Gene Ontology
ID GO:0005783
description auxin efflux carrier component 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29265: 37574-37811 , PASA_asmbl_29266: 38018-38858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002802_020 0.0 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
2 Hb_032969_030 0.1173459617 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_000069_700 0.1232347932 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
4 Hb_007218_150 0.1238171244 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
5 Hb_000111_100 0.1248456465 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
6 Hb_001235_110 0.1273972181 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
7 Hb_003581_220 0.1291916534 - - unnamed protein product [Vitis vinifera]
8 Hb_003181_050 0.131782934 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
9 Hb_002081_030 0.1378060685 - - unnamed protein product [Coffea canephora]
10 Hb_010402_050 0.1386571984 - - -
11 Hb_001172_120 0.1445958445 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
12 Hb_000878_020 0.144978604 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
13 Hb_000802_100 0.1457088057 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
14 Hb_000110_170 0.1464689569 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_120823_010 0.1473439623 - - -
16 Hb_001633_030 0.150327635 - - -
17 Hb_001314_040 0.1522927352 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
18 Hb_011671_390 0.1546907696 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
19 Hb_001157_010 0.1554248234 - - deoxyhypusine synthase, putative [Ricinus communis]
20 Hb_000318_160 0.1594924786 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]

Gene co-expression network

sample Hb_002802_020 Hb_002802_020 Hb_032969_030 Hb_032969_030 Hb_002802_020--Hb_032969_030 Hb_000069_700 Hb_000069_700 Hb_002802_020--Hb_000069_700 Hb_007218_150 Hb_007218_150 Hb_002802_020--Hb_007218_150 Hb_000111_100 Hb_000111_100 Hb_002802_020--Hb_000111_100 Hb_001235_110 Hb_001235_110 Hb_002802_020--Hb_001235_110 Hb_003581_220 Hb_003581_220 Hb_002802_020--Hb_003581_220 Hb_000300_390 Hb_000300_390 Hb_032969_030--Hb_000300_390 Hb_032969_030--Hb_003581_220 Hb_005663_120 Hb_005663_120 Hb_032969_030--Hb_005663_120 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_001172_120 Hb_001172_120 Hb_000069_700--Hb_001172_120 Hb_000069_700--Hb_001235_110 Hb_001726_040 Hb_001726_040 Hb_000069_700--Hb_001726_040 Hb_001633_030 Hb_001633_030 Hb_000069_700--Hb_001633_030 Hb_007192_100 Hb_007192_100 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410 Hb_007317_160 Hb_007317_160 Hb_007218_150--Hb_007317_160 Hb_007218_150--Hb_032969_030 Hb_007218_150--Hb_000300_390 Hb_007218_150--Hb_005663_120 Hb_000789_110 Hb_000789_110 Hb_007218_150--Hb_000789_110 Hb_000167_030 Hb_000167_030 Hb_007218_150--Hb_000167_030 Hb_000645_140 Hb_000645_140 Hb_000111_100--Hb_000645_140 Hb_147752_010 Hb_147752_010 Hb_000111_100--Hb_147752_010 Hb_000878_020 Hb_000878_020 Hb_000111_100--Hb_000878_020 Hb_027472_160 Hb_027472_160 Hb_000111_100--Hb_027472_160 Hb_000062_390 Hb_000062_390 Hb_000111_100--Hb_000062_390 Hb_000093_110 Hb_000093_110 Hb_000111_100--Hb_000093_110 Hb_001235_110--Hb_001172_120 Hb_000330_070 Hb_000330_070 Hb_001235_110--Hb_000330_070 Hb_000802_100 Hb_000802_100 Hb_001235_110--Hb_000802_100 Hb_116349_110 Hb_116349_110 Hb_001235_110--Hb_116349_110 Hb_000975_320 Hb_000975_320 Hb_001235_110--Hb_000975_320 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_000530_070 Hb_000530_070 Hb_003581_220--Hb_000530_070 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_001846_070 Hb_001846_070 Hb_003581_220--Hb_001846_070 Hb_001076_020 Hb_001076_020 Hb_003581_220--Hb_001076_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23504 1.02869 1.73777 2.24261 1.00221 0.731322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73754 11.5602 6.1121 0.362066 2.075

CAGE analysis