Hb_010402_050

Information

Type -
Description -
Location Contig10402: 55619-61999
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01490: 55822-64106 , PASA_asmbl_01491: 60772-61131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010402_050 0.0 - - -
2 Hb_003581_220 0.0932056473 - - unnamed protein product [Vitis vinifera]
3 Hb_050806_010 0.0981487891 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
4 Hb_152910_020 0.1002572676 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
5 Hb_001172_100 0.1072832236 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
6 Hb_032969_030 0.1126337733 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_000318_160 0.1190907239 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
8 Hb_001076_020 0.1220634865 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
9 Hb_120823_010 0.1222254176 - - -
10 Hb_000635_210 0.12238846 - - unknown [Populus trichocarpa]
11 Hb_068056_030 0.1235133008 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
12 Hb_000445_490 0.1241761748 - - -
13 Hb_005278_040 0.1250957016 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
14 Hb_023344_050 0.1252543738 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
15 Hb_002774_050 0.1268870586 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
16 Hb_005663_120 0.1271563435 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
17 Hb_000928_130 0.1291609704 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_000042_200 0.1299665084 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
19 Hb_002918_290 0.1304121405 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
20 Hb_000178_120 0.130444027 - - PREDICTED: histone H2B [Jatropha curcas]

Gene co-expression network

sample Hb_010402_050 Hb_010402_050 Hb_003581_220 Hb_003581_220 Hb_010402_050--Hb_003581_220 Hb_050806_010 Hb_050806_010 Hb_010402_050--Hb_050806_010 Hb_152910_020 Hb_152910_020 Hb_010402_050--Hb_152910_020 Hb_001172_100 Hb_001172_100 Hb_010402_050--Hb_001172_100 Hb_032969_030 Hb_032969_030 Hb_010402_050--Hb_032969_030 Hb_000318_160 Hb_000318_160 Hb_010402_050--Hb_000318_160 Hb_003581_220--Hb_032969_030 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_000530_070 Hb_000530_070 Hb_003581_220--Hb_000530_070 Hb_001846_070 Hb_001846_070 Hb_003581_220--Hb_001846_070 Hb_001076_020 Hb_001076_020 Hb_003581_220--Hb_001076_020 Hb_000027_150 Hb_000027_150 Hb_050806_010--Hb_000027_150 Hb_029904_040 Hb_029904_040 Hb_050806_010--Hb_029904_040 Hb_050806_010--Hb_152910_020 Hb_005663_120 Hb_005663_120 Hb_050806_010--Hb_005663_120 Hb_007192_100 Hb_007192_100 Hb_050806_010--Hb_007192_100 Hb_005527_040 Hb_005527_040 Hb_050806_010--Hb_005527_040 Hb_003185_050 Hb_003185_050 Hb_152910_020--Hb_003185_050 Hb_001005_080 Hb_001005_080 Hb_152910_020--Hb_001005_080 Hb_152910_020--Hb_029904_040 Hb_152910_020--Hb_007192_100 Hb_000115_230 Hb_000115_230 Hb_152910_020--Hb_000115_230 Hb_138585_040 Hb_138585_040 Hb_001172_100--Hb_138585_040 Hb_000384_120 Hb_000384_120 Hb_001172_100--Hb_000384_120 Hb_002324_010 Hb_002324_010 Hb_001172_100--Hb_002324_010 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_005045_070 Hb_005045_070 Hb_001172_100--Hb_005045_070 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_000300_390 Hb_000300_390 Hb_032969_030--Hb_000300_390 Hb_032969_030--Hb_005663_120 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_003349_080 Hb_003349_080 Hb_000318_160--Hb_003349_080 Hb_003050_280 Hb_003050_280 Hb_000318_160--Hb_003050_280 Hb_000224_140 Hb_000224_140 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000928_130 Hb_000928_130 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92821 1.49102 1.11226 5.34445 1.30285 2.06236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8639 15.1892 10.6536 2.08563 4.66516

CAGE analysis