Hb_000530_070

Information

Type -
Description -
Location Contig530: 121290-145642
Sequence    

Annotation

kegg
ID rcu:RCOM_0759970
description beta-fructofuranosidase, putative
nr
ID AGU19630.1
description neutral/alkaline invertase 3 [Hevea brasiliensis]
swissprot
ID Q9FK88
description Alkaline/neutral invertase E, chloroplastic OS=Arabidopsis thaliana GN=INVE PE=1 SV=1
trembl
ID W5REH2
description Neutral/alkaline invertase 3 OS=Hevea brasiliensis GN=NIN3 PE=2 SV=1
Gene Ontology
ID GO:0033926
description alkaline neutral invertase cinv1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47314: 120622-144313 , PASA_asmbl_47317: 137563-137668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000530_070 0.0 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
2 Hb_001314_040 0.0859854519 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
3 Hb_001157_010 0.0899490192 - - deoxyhypusine synthase, putative [Ricinus communis]
4 Hb_003581_220 0.091254626 - - unnamed protein product [Vitis vinifera]
5 Hb_000802_100 0.0988431302 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
6 Hb_002026_120 0.0991269304 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
7 Hb_001076_020 0.0993603891 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
8 Hb_002876_120 0.0997086032 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
9 Hb_001846_070 0.1007609864 - - PREDICTED: fructokinase-1 [Jatropha curcas]
10 Hb_002742_090 0.1009923824 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
11 Hb_006569_100 0.1034858002 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
12 Hb_003326_020 0.1041505227 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
13 Hb_000069_550 0.1047850399 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
14 Hb_003581_260 0.106753464 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
15 Hb_000224_140 0.1089318363 - - ribonuclease z, chloroplast, putative [Ricinus communis]
16 Hb_002182_030 0.1091286264 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
17 Hb_002239_060 0.1114422698 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
18 Hb_068056_030 0.1150974201 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
19 Hb_001172_120 0.1214795991 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
20 Hb_013405_140 0.1229981051 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]

Gene co-expression network

sample Hb_000530_070 Hb_000530_070 Hb_001314_040 Hb_001314_040 Hb_000530_070--Hb_001314_040 Hb_001157_010 Hb_001157_010 Hb_000530_070--Hb_001157_010 Hb_003581_220 Hb_003581_220 Hb_000530_070--Hb_003581_220 Hb_000802_100 Hb_000802_100 Hb_000530_070--Hb_000802_100 Hb_002026_120 Hb_002026_120 Hb_000530_070--Hb_002026_120 Hb_001076_020 Hb_001076_020 Hb_000530_070--Hb_001076_020 Hb_006569_100 Hb_006569_100 Hb_001314_040--Hb_006569_100 Hb_001314_040--Hb_001157_010 Hb_020419_020 Hb_020419_020 Hb_001314_040--Hb_020419_020 Hb_001314_040--Hb_000802_100 Hb_000224_140 Hb_000224_140 Hb_001314_040--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_001314_040--Hb_068056_030 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_002876_120 Hb_002876_120 Hb_001157_010--Hb_002876_120 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_001157_010--Hb_006569_100 Hb_032969_030 Hb_032969_030 Hb_003581_220--Hb_032969_030 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_001846_070 Hb_001846_070 Hb_003581_220--Hb_001846_070 Hb_003581_220--Hb_001076_020 Hb_000802_100--Hb_002876_120 Hb_000802_100--Hb_001157_010 Hb_003579_030 Hb_003579_030 Hb_000802_100--Hb_003579_030 Hb_003581_260 Hb_003581_260 Hb_000802_100--Hb_003581_260 Hb_000928_130 Hb_000928_130 Hb_002026_120--Hb_000928_130 Hb_000096_150 Hb_000096_150 Hb_002026_120--Hb_000096_150 Hb_023344_050 Hb_023344_050 Hb_002026_120--Hb_023344_050 Hb_000318_160 Hb_000318_160 Hb_002026_120--Hb_000318_160 Hb_002026_120--Hb_001314_040 Hb_001076_020--Hb_000224_140 Hb_005463_140 Hb_005463_140 Hb_001076_020--Hb_005463_140 Hb_017948_010 Hb_017948_010 Hb_001076_020--Hb_017948_010 Hb_001076_020--Hb_003326_020 Hb_000193_120 Hb_000193_120 Hb_001076_020--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_001076_020--Hb_000181_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.46944 1.55558 4.97086 5.46046 3.43523 3.86299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1745 26.8994 24.3747 5.92119 6.70836

CAGE analysis