Hb_007218_150

Information

Type -
Description -
Location Contig7218: 152071-154042
Sequence    

Annotation

kegg
ID cit:102614190
description profilin-3-like
nr
ID Q9M7N0.1
description RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
swissprot
ID Q9M7N0
description Profilin-3 OS=Hevea brasiliensis PE=1 SV=1
trembl
ID A0A067E9F6
description Profilin OS=Citrus sinensis GN=CISIN_1g032890mg PE=3 SV=1
Gene Ontology
ID GO:0005737
description profilin 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55686: 152087-154082
cDNA
(Sanger)
(ID:Location)		 040_J18.ab1: 152118-154082 , 049_P09.ab1: 152118-153997 , 053_P05.ab1: 152071-154059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_150 0.0 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
2 Hb_007317_160 0.1006336639 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
3 Hb_032969_030 0.1007020186 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_000300_390 0.1085514172 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
5 Hb_005663_120 0.1087718939 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
6 Hb_000789_110 0.1131004599 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
7 Hb_000167_030 0.119226547 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
8 Hb_050806_010 0.1222375108 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
9 Hb_002316_120 0.1228175508 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
10 Hb_002802_020 0.1238171244 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
11 Hb_120823_010 0.1279338696 - - -
12 Hb_001604_030 0.1287659016 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
13 Hb_003581_220 0.1294123817 - - unnamed protein product [Vitis vinifera]
14 Hb_020419_020 0.1302925766 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_010402_050 0.1311300943 - - -
16 Hb_001232_140 0.13239309 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
17 Hb_006452_040 0.1324079014 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
18 Hb_012539_020 0.1325958975 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
19 Hb_001157_010 0.1370993176 - - deoxyhypusine synthase, putative [Ricinus communis]
20 Hb_000260_200 0.1384328436 - - -

Gene co-expression network

sample Hb_007218_150 Hb_007218_150 Hb_007317_160 Hb_007317_160 Hb_007218_150--Hb_007317_160 Hb_032969_030 Hb_032969_030 Hb_007218_150--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_007218_150--Hb_000300_390 Hb_005663_120 Hb_005663_120 Hb_007218_150--Hb_005663_120 Hb_000789_110 Hb_000789_110 Hb_007218_150--Hb_000789_110 Hb_000167_030 Hb_000167_030 Hb_007218_150--Hb_000167_030 Hb_006452_040 Hb_006452_040 Hb_007317_160--Hb_006452_040 Hb_001155_040 Hb_001155_040 Hb_007317_160--Hb_001155_040 Hb_005463_140 Hb_005463_140 Hb_007317_160--Hb_005463_140 Hb_012539_020 Hb_012539_020 Hb_007317_160--Hb_012539_020 Hb_000012_100 Hb_000012_100 Hb_007317_160--Hb_000012_100 Hb_007317_160--Hb_005663_120 Hb_032969_030--Hb_000300_390 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_032969_030--Hb_005663_120 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_002316_120 Hb_002316_120 Hb_000300_390--Hb_002316_120 Hb_000300_390--Hb_000789_110 Hb_000300_390--Hb_005663_120 Hb_000300_390--Hb_012539_020 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_005663_120--Hb_012539_020 Hb_005663_120--Hb_002316_120 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_000789_110--Hb_002316_120 Hb_000270_720 Hb_000270_720 Hb_000789_110--Hb_000270_720 Hb_000820_130 Hb_000820_130 Hb_000789_110--Hb_000820_130 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_004007_180 Hb_004007_180 Hb_000789_110--Hb_004007_180 Hb_009778_040 Hb_009778_040 Hb_000167_030--Hb_009778_040 Hb_116420_020 Hb_116420_020 Hb_000167_030--Hb_116420_020 Hb_000167_030--Hb_005663_120 Hb_001232_140 Hb_001232_140 Hb_000167_030--Hb_001232_140 Hb_000167_030--Hb_032969_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2435 9.07814 28.0023 86.447 35.2852 26.6023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
181.449 274.026 151.418 18.1179 28.373

CAGE analysis