Hb_009778_040

Information

Type -
Description -
Location Contig9778: 44019-47412
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11110g
description POPTRDRAFT_738825; hypothetical protein
nr
ID XP_011004001.1
description PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9P8B4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11110g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64222: 43830-47346 , PASA_asmbl_64223: 43928-47179 , PASA_asmbl_64225: 45288-45619
cDNA
(Sanger)
(ID:Location)		 036_F21.ab1: 43965-47346 , 039_F16.ab1: 44074-47318

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009778_040 0.0 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
2 Hb_002081_030 0.1045474021 - - unnamed protein product [Coffea canephora]
3 Hb_002838_030 0.1081519355 - - 40S ribosomal protein S25A [Hevea brasiliensis]
4 Hb_001105_090 0.1106673199 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
5 Hb_003020_330 0.1110182013 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
6 Hb_006588_080 0.1113140091 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
7 Hb_120823_010 0.1128264392 - - -
8 Hb_000809_060 0.112837702 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
9 Hb_000110_170 0.1196322511 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_005663_120 0.1215271867 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
11 Hb_002316_120 0.1223635406 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
12 Hb_007313_080 0.1228402025 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
13 Hb_004735_050 0.1238239566 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
14 Hb_007441_260 0.124595144 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
15 Hb_000789_110 0.1256223097 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
16 Hb_000768_130 0.1275854277 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
17 Hb_000300_390 0.1281166509 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
18 Hb_000915_120 0.1281264156 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
19 Hb_000454_180 0.1301520885 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
20 Hb_003540_200 0.1304366121 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]

Gene co-expression network

sample Hb_009778_040 Hb_009778_040 Hb_002081_030 Hb_002081_030 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_001105_090 Hb_001105_090 Hb_009778_040--Hb_001105_090 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010 Hb_000087_130 Hb_000087_130 Hb_002081_030--Hb_000087_130 Hb_001726_040 Hb_001726_040 Hb_002081_030--Hb_001726_040 Hb_000948_220 Hb_000948_220 Hb_002081_030--Hb_000948_220 Hb_000809_060 Hb_000809_060 Hb_002081_030--Hb_000809_060 Hb_027472_160 Hb_027472_160 Hb_002081_030--Hb_027472_160 Hb_000997_120 Hb_000997_120 Hb_002838_030--Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_002838_030--Hb_007120_090 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_002838_030--Hb_000948_220 Hb_002838_030--Hb_003020_330 Hb_002838_030--Hb_000087_130 Hb_004429_110 Hb_004429_110 Hb_001105_090--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_001105_090--Hb_007313_080 Hb_001105_090--Hb_120823_010 Hb_001105_090--Hb_000809_060 Hb_001105_090--Hb_002081_030 Hb_003020_330--Hb_007313_080 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_003020_330--Hb_027472_160 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_000172_420 Hb_000172_420 Hb_006588_080--Hb_000172_420 Hb_000300_390 Hb_000300_390 Hb_120823_010--Hb_000300_390 Hb_000389_080 Hb_000389_080 Hb_120823_010--Hb_000389_080 Hb_120823_010--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.2251 42.109 108.668 202.202 22.7361 55.2092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
380.39 676.405 232.429 107.535 31.6238

CAGE analysis