Hb_001105_090

Information

Type transcription factor
Description TF Family: C3H
Location Contig1105: 41860-45957
Sequence    

Annotation

kegg
ID rcu:RCOM_1341700
description hypothetical protein
nr
ID XP_002515138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SE96
description GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1
trembl
ID B9RMZ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_090 0.0 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
2 Hb_009778_040 0.1106673199 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
3 Hb_004429_110 0.1395867255 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
4 Hb_007313_080 0.1400735232 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
5 Hb_120823_010 0.1450195876 - - -
6 Hb_000809_060 0.1460135514 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
7 Hb_002081_030 0.1465680036 - - unnamed protein product [Coffea canephora]
8 Hb_000454_180 0.1472897228 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
9 Hb_015430_010 0.1475216877 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
10 Hb_003020_330 0.1520059012 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
11 Hb_006588_080 0.1542391795 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
12 Hb_000768_130 0.1560998853 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
13 Hb_000948_220 0.1561162613 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
14 Hb_002838_030 0.1590198253 - - 40S ribosomal protein S25A [Hevea brasiliensis]
15 Hb_000030_200 0.1607865086 - - PREDICTED: early nodulin-93-like [Populus euphratica]
16 Hb_000789_110 0.1651312084 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
17 Hb_000975_180 0.1656946124 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
18 Hb_002391_220 0.1682052272 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
19 Hb_007441_260 0.1687217554 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
20 Hb_004755_030 0.1706181413 - - EG964 [Manihot glaziovii]

Gene co-expression network

sample Hb_001105_090 Hb_001105_090 Hb_009778_040 Hb_009778_040 Hb_001105_090--Hb_009778_040 Hb_004429_110 Hb_004429_110 Hb_001105_090--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_001105_090--Hb_007313_080 Hb_120823_010 Hb_120823_010 Hb_001105_090--Hb_120823_010 Hb_000809_060 Hb_000809_060 Hb_001105_090--Hb_000809_060 Hb_002081_030 Hb_002081_030 Hb_001105_090--Hb_002081_030 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_009778_040--Hb_120823_010 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_000768_130 Hb_000768_130 Hb_007313_080--Hb_000768_130 Hb_007313_080--Hb_003020_330 Hb_007313_080--Hb_000454_180 Hb_002900_130 Hb_002900_130 Hb_007313_080--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_007313_080--Hb_154141_030 Hb_027472_160 Hb_027472_160 Hb_007313_080--Hb_027472_160 Hb_000300_390 Hb_000300_390 Hb_120823_010--Hb_000300_390 Hb_120823_010--Hb_006588_080 Hb_000389_080 Hb_000389_080 Hb_120823_010--Hb_000389_080 Hb_002316_120 Hb_002316_120 Hb_120823_010--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390 Hb_000809_060--Hb_002081_030 Hb_000809_060--Hb_009778_040 Hb_007885_010 Hb_007885_010 Hb_000809_060--Hb_007885_010 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_005144_070 Hb_005144_070 Hb_000809_060--Hb_005144_070 Hb_076693_040 Hb_076693_040 Hb_000809_060--Hb_076693_040 Hb_000087_130 Hb_000087_130 Hb_002081_030--Hb_000087_130 Hb_001726_040 Hb_001726_040 Hb_002081_030--Hb_001726_040 Hb_000948_220 Hb_000948_220 Hb_002081_030--Hb_000948_220 Hb_002081_030--Hb_027472_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0704393 0.495846 0.939356 1.71819 0.335017 0.424282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62266 5.54238 1.36649 0.721729 0.399716

CAGE analysis