Hb_000948_220

Information

Type -
Description -
Location Contig948: 224143-227075
Sequence    

Annotation

kegg
ID cic:CICLE_v10013189mg
description hypothetical protein
nr
ID XP_006430204.1
description hypothetical protein CICLE_v10013189mg [Citrus clementina]
swissprot
ID P46270
description Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1
trembl
ID V4UUU0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013189mg PE=4 SV=1
Gene Ontology
ID GO:0005750
description cytochrome b-c1 complex subunit 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63331: 224184-226946
cDNA
(Sanger)
(ID:Location)		 016_G17.ab1: 224200-226940 , 045_A22.ab1: 224202-226940 , 051_J02.ab1: 224200-226940 , 052_N06.ab1: 224200-226940

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_220 0.0 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
2 Hb_000087_130 0.0676143126 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
3 Hb_007120_090 0.0727615823 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
4 Hb_002838_030 0.0789038842 - - 40S ribosomal protein S25A [Hevea brasiliensis]
5 Hb_001155_040 0.0828610902 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
6 Hb_000317_070 0.0830966626 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
7 Hb_174865_010 0.0833750329 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
8 Hb_007441_300 0.0858981748 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000030_200 0.0867986488 - - PREDICTED: early nodulin-93-like [Populus euphratica]
10 Hb_000915_120 0.0870612273 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
11 Hb_000997_120 0.0908692582 - - 40S ribosomal protein S15E [Hevea brasiliensis]
12 Hb_000735_040 0.0932996097 - - 60S ribosomal protein L32A [Hevea brasiliensis]
13 Hb_001221_310 0.0933584609 - - sec61 gamma subunit, putative [Ricinus communis]
14 Hb_072922_020 0.095146125 - - SNARE-like superfamily protein [Theobroma cacao]
15 Hb_002081_030 0.0958127319 - - unnamed protein product [Coffea canephora]
16 Hb_000676_160 0.0959971934 - - folate carrier protein, putative [Ricinus communis]
17 Hb_000093_110 0.096000381 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
18 Hb_000062_390 0.0972061028 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
19 Hb_002006_130 0.0991325646 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
20 Hb_006915_040 0.1002056021 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000948_220 Hb_000948_220 Hb_000087_130 Hb_000087_130 Hb_000948_220--Hb_000087_130 Hb_007120_090 Hb_007120_090 Hb_000948_220--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000948_220--Hb_002838_030 Hb_001155_040 Hb_001155_040 Hb_000948_220--Hb_001155_040 Hb_000317_070 Hb_000317_070 Hb_000948_220--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_000948_220--Hb_174865_010 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120 Hb_000997_120 Hb_000997_120 Hb_007120_090--Hb_000997_120 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_002838_030 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130 Hb_002838_030--Hb_000997_120 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_003020_330 Hb_003020_330 Hb_002838_030--Hb_003020_330 Hb_002838_030--Hb_000087_130 Hb_006452_040 Hb_006452_040 Hb_001155_040--Hb_006452_040 Hb_005463_140 Hb_005463_140 Hb_001155_040--Hb_005463_140 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_007317_160 Hb_007317_160 Hb_001155_040--Hb_007317_160 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080 Hb_004871_020 Hb_004871_020 Hb_000317_070--Hb_004871_020 Hb_007441_300 Hb_007441_300 Hb_000317_070--Hb_007441_300 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_153544_010 Hb_153544_010 Hb_000317_070--Hb_153544_010 Hb_174865_010--Hb_000735_040 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_003018_020 Hb_003018_020 Hb_174865_010--Hb_003018_020 Hb_174865_010--Hb_007441_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.7773 36.6272 86.1574 160.981 61.0846 62.9947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
263.001 492.871 122.964 88.0284 69.1974

CAGE analysis