Hb_116420_020

Information

Type -
Description -
Location Contig116420: 6592-7134
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14750g
description POPTRDRAFT_563339; Phytosulfokines 3 precursor family protein
nr
ID XP_002310329.1
description Phytosulfokines 3 precursor family protein [Populus trichocarpa]
swissprot
ID Q9M2Y0
description Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2
trembl
ID B9HFY9
description Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=4 SV=1
Gene Ontology
ID GO:0005576
description phytosulfokines 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05087: 6540-7088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116420_020 0.0 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
2 Hb_009778_040 0.134713903 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
3 Hb_000167_030 0.1375438668 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
4 Hb_025645_030 0.1478599911 - - -
5 Hb_001096_030 0.1489897922 - - uridylate kinase plant, putative [Ricinus communis]
6 Hb_007254_080 0.1581127452 - - -
7 Hb_005663_120 0.1613005775 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
8 Hb_000178_120 0.1622410955 - - PREDICTED: histone H2B [Jatropha curcas]
9 Hb_023344_050 0.168531953 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
10 Hb_003020_330 0.1708115865 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
11 Hb_000110_170 0.1712441355 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_003540_200 0.1719940428 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
13 Hb_001377_380 0.1721969066 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
14 Hb_003007_010 0.1724408361 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
15 Hb_004545_130 0.1734246968 - - uncharacterized protein LOC100305465 [Glycine max]
16 Hb_103118_020 0.1751346742 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
17 Hb_015430_010 0.1752871051 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
18 Hb_007441_260 0.1785152705 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
19 Hb_005000_180 0.1788008122 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
20 Hb_004429_110 0.1796897956 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]

Gene co-expression network

sample Hb_116420_020 Hb_116420_020 Hb_009778_040 Hb_009778_040 Hb_116420_020--Hb_009778_040 Hb_000167_030 Hb_000167_030 Hb_116420_020--Hb_000167_030 Hb_025645_030 Hb_025645_030 Hb_116420_020--Hb_025645_030 Hb_001096_030 Hb_001096_030 Hb_116420_020--Hb_001096_030 Hb_007254_080 Hb_007254_080 Hb_116420_020--Hb_007254_080 Hb_005663_120 Hb_005663_120 Hb_116420_020--Hb_005663_120 Hb_002081_030 Hb_002081_030 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_001105_090 Hb_001105_090 Hb_009778_040--Hb_001105_090 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010 Hb_007218_150 Hb_007218_150 Hb_000167_030--Hb_007218_150 Hb_000167_030--Hb_009778_040 Hb_000167_030--Hb_005663_120 Hb_001232_140 Hb_001232_140 Hb_000167_030--Hb_001232_140 Hb_032969_030 Hb_032969_030 Hb_000167_030--Hb_032969_030 Hb_023344_050 Hb_023344_050 Hb_025645_030--Hb_023344_050 Hb_004162_180 Hb_004162_180 Hb_025645_030--Hb_004162_180 Hb_001225_010 Hb_001225_010 Hb_025645_030--Hb_001225_010 Hb_000110_170 Hb_000110_170 Hb_025645_030--Hb_000110_170 Hb_001172_100 Hb_001172_100 Hb_025645_030--Hb_001172_100 Hb_006420_030 Hb_006420_030 Hb_025645_030--Hb_006420_030 Hb_001096_030--Hb_005663_120 Hb_001096_030--Hb_001232_140 Hb_005000_180 Hb_005000_180 Hb_001096_030--Hb_005000_180 Hb_000163_210 Hb_000163_210 Hb_001096_030--Hb_000163_210 Hb_001096_030--Hb_023344_050 Hb_005527_040 Hb_005527_040 Hb_001096_030--Hb_005527_040 Hb_007254_080--Hb_000110_170 Hb_004545_130 Hb_004545_130 Hb_007254_080--Hb_004545_130 Hb_002243_060 Hb_002243_060 Hb_007254_080--Hb_002243_060 Hb_004567_020 Hb_004567_020 Hb_007254_080--Hb_004567_020 Hb_007254_080--Hb_005000_180 Hb_147752_010 Hb_147752_010 Hb_007254_080--Hb_147752_010 Hb_000300_390 Hb_000300_390 Hb_005663_120--Hb_000300_390 Hb_012539_020 Hb_012539_020 Hb_005663_120--Hb_012539_020 Hb_002316_120 Hb_002316_120 Hb_005663_120--Hb_002316_120 Hb_005663_120--Hb_032969_030 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.31085 4.34879 24.8807 97.3309 4.18037 9.10604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.359 295.025 141.803 65.1149 13.6363

CAGE analysis