Hb_004567_020

Information

Type -
Description -
Location Contig4567: 18291-21036
Sequence    

Annotation

kegg
ID egr:104456534
description small ubiquitin-related modifier 1-like
nr
ID XP_010094465.1
description Small ubiquitin-related modifier 2 [Morus notabilis]
swissprot
ID Q9FLP6
description Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1
trembl
ID W9QWL8
description Small ubiquitin-related modifier OS=Morus notabilis GN=L484_000706 PE=3 SV=1
Gene Ontology
ID GO:0005634
description small ubiquitin-related modifier 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43439: 18300-21047 , PASA_asmbl_43442: 19311-19432
cDNA
(Sanger)
(ID:Location)		 006_F12.ab1: 18427-20974 , 007_J04.ab1: 18381-20981 , 011_O11.ab1: 18419-20932 , 031_D22.ab1: 19177-20981

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004567_020 0.0 - - Small ubiquitin-related modifier 2 [Morus notabilis]
2 Hb_120823_010 0.1285820395 - - -
3 Hb_004545_130 0.1293865503 - - uncharacterized protein LOC100305465 [Glycine max]
4 Hb_000878_020 0.130484877 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
5 Hb_000110_170 0.1319282595 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_147752_010 0.133217316 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
7 Hb_007254_080 0.1334135472 - - -
8 Hb_001434_070 0.134476569 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
9 Hb_000260_200 0.1372407353 - - -
10 Hb_003181_050 0.1380625041 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
11 Hb_006588_080 0.1425507436 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
12 Hb_003198_010 0.1434498634 - - Valine--tRNA ligase [Gossypium arboreum]
13 Hb_005000_180 0.1437284434 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
14 Hb_000111_100 0.1441630356 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
15 Hb_004209_030 0.1471027739 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
16 Hb_001017_070 0.1496474409 - - conserved hypothetical protein [Ricinus communis]
17 Hb_100180_010 0.1506022605 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
18 Hb_008066_030 0.1512048252 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
19 Hb_000635_080 0.1527172111 - - 60S ribosomal protein L17A [Hevea brasiliensis]
20 Hb_001785_040 0.1529175167 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]

Gene co-expression network

sample Hb_004567_020 Hb_004567_020 Hb_120823_010 Hb_120823_010 Hb_004567_020--Hb_120823_010 Hb_004545_130 Hb_004545_130 Hb_004567_020--Hb_004545_130 Hb_000878_020 Hb_000878_020 Hb_004567_020--Hb_000878_020 Hb_000110_170 Hb_000110_170 Hb_004567_020--Hb_000110_170 Hb_147752_010 Hb_147752_010 Hb_004567_020--Hb_147752_010 Hb_007254_080 Hb_007254_080 Hb_004567_020--Hb_007254_080 Hb_000300_390 Hb_000300_390 Hb_120823_010--Hb_000300_390 Hb_006588_080 Hb_006588_080 Hb_120823_010--Hb_006588_080 Hb_000389_080 Hb_000389_080 Hb_120823_010--Hb_000389_080 Hb_002316_120 Hb_002316_120 Hb_120823_010--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_004545_130--Hb_000635_080 Hb_001377_380 Hb_001377_380 Hb_004545_130--Hb_001377_380 Hb_000617_110 Hb_000617_110 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004735_050 Hb_004735_050 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030 Hb_000878_020--Hb_006588_080 Hb_000878_020--Hb_000110_170 Hb_001386_050 Hb_001386_050 Hb_000878_020--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_000878_020--Hb_008948_050 Hb_002344_070 Hb_002344_070 Hb_000878_020--Hb_002344_070 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_003020_330 Hb_003020_330 Hb_000110_170--Hb_003020_330 Hb_000110_170--Hb_120823_010 Hb_001225_010 Hb_001225_010 Hb_000110_170--Hb_001225_010 Hb_001240_020 Hb_001240_020 Hb_147752_010--Hb_001240_020 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_000928_130 Hb_000928_130 Hb_147752_010--Hb_000928_130 Hb_147752_010--Hb_000110_170 Hb_007441_260 Hb_007441_260 Hb_147752_010--Hb_007441_260 Hb_000445_490 Hb_000445_490 Hb_147752_010--Hb_000445_490 Hb_007254_080--Hb_000110_170 Hb_007254_080--Hb_004545_130 Hb_002243_060 Hb_002243_060 Hb_007254_080--Hb_002243_060 Hb_005000_180 Hb_005000_180 Hb_007254_080--Hb_005000_180 Hb_007254_080--Hb_147752_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.9825 98.1991 87.0649 71.3728 27.4162 39.4277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
539.799 889.385 310.967 106.578 91.3612

CAGE analysis