Hb_002243_060

Information

Type -
Description -
Location Contig2243: 94277-97356
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00750g
description hypothetical protein
nr
ID XP_006389541.1
description hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DZL7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0022s00750g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23341: 95044-95250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002243_060 0.0 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
2 Hb_007254_080 0.1240551685 - - -
3 Hb_000110_170 0.1278990871 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002081_030 0.1386311462 - - unnamed protein product [Coffea canephora]
5 Hb_002042_080 0.1387413375 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
6 Hb_000178_120 0.1409752165 - - PREDICTED: histone H2B [Jatropha curcas]
7 Hb_147752_010 0.1466325621 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
8 Hb_000031_080 0.1474903859 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
9 Hb_009778_040 0.1480504196 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
10 Hb_004567_020 0.1589040235 - - Small ubiquitin-related modifier 2 [Morus notabilis]
11 Hb_001766_030 0.1609771958 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
12 Hb_004724_380 0.1622454277 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
13 Hb_000454_180 0.1632444791 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
14 Hb_000768_130 0.1663027912 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
15 Hb_120823_010 0.1669142098 - - -
16 Hb_000809_060 0.1688179949 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
17 Hb_007441_260 0.1689240722 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
18 Hb_007313_080 0.1692497426 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
19 Hb_003020_330 0.1724566511 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
20 Hb_000768_140 0.1743739839 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002243_060 Hb_002243_060 Hb_007254_080 Hb_007254_080 Hb_002243_060--Hb_007254_080 Hb_000110_170 Hb_000110_170 Hb_002243_060--Hb_000110_170 Hb_002081_030 Hb_002081_030 Hb_002243_060--Hb_002081_030 Hb_002042_080 Hb_002042_080 Hb_002243_060--Hb_002042_080 Hb_000178_120 Hb_000178_120 Hb_002243_060--Hb_000178_120 Hb_147752_010 Hb_147752_010 Hb_002243_060--Hb_147752_010 Hb_007254_080--Hb_000110_170 Hb_004545_130 Hb_004545_130 Hb_007254_080--Hb_004545_130 Hb_004567_020 Hb_004567_020 Hb_007254_080--Hb_004567_020 Hb_005000_180 Hb_005000_180 Hb_007254_080--Hb_005000_180 Hb_007254_080--Hb_147752_010 Hb_000878_020 Hb_000878_020 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_003020_330 Hb_003020_330 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_001225_010 Hb_001225_010 Hb_000110_170--Hb_001225_010 Hb_000087_130 Hb_000087_130 Hb_002081_030--Hb_000087_130 Hb_001726_040 Hb_001726_040 Hb_002081_030--Hb_001726_040 Hb_000948_220 Hb_000948_220 Hb_002081_030--Hb_000948_220 Hb_000809_060 Hb_000809_060 Hb_002081_030--Hb_000809_060 Hb_027472_160 Hb_027472_160 Hb_002081_030--Hb_027472_160 Hb_009778_040 Hb_009778_040 Hb_002081_030--Hb_009778_040 Hb_001059_120 Hb_001059_120 Hb_002042_080--Hb_001059_120 Hb_002042_080--Hb_000178_120 Hb_002042_080--Hb_147752_010 Hb_007441_260 Hb_007441_260 Hb_002042_080--Hb_007441_260 Hb_001240_020 Hb_001240_020 Hb_002042_080--Hb_001240_020 Hb_023344_050 Hb_023344_050 Hb_000178_120--Hb_023344_050 Hb_000178_120--Hb_007441_260 Hb_002774_050 Hb_002774_050 Hb_000178_120--Hb_002774_050 Hb_010402_050 Hb_010402_050 Hb_000178_120--Hb_010402_050 Hb_147752_010--Hb_001240_020 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_000928_130 Hb_000928_130 Hb_147752_010--Hb_000928_130 Hb_147752_010--Hb_000110_170 Hb_147752_010--Hb_007441_260 Hb_000445_490 Hb_000445_490 Hb_147752_010--Hb_000445_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.917141 0.657834 0.838725 1.71966 0.0558087 0.0736672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25807 6.68118 1.91532 0.812187 0.911217

CAGE analysis