Hb_002042_080

Information

Type rubber biosynthesis
Description Gene Name: Mevalonate kinase
Location Contig2042: 84287-88233
Sequence    

Annotation

kegg
ID rcu:RCOM_0573350
description mevalonate kinase, putative (EC:2.7.1.36)
nr
ID AFJ74336.1
description mevalonate kinase [Hevea brasiliensis]
swissprot
ID P46086
description Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1
trembl
ID A0A067JVG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23362 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20939: 87900-88143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_080 0.0 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
2 Hb_001059_120 0.1196205503 - - NADH dehydrogenase, putative [Ricinus communis]
3 Hb_000178_120 0.1349739921 - - PREDICTED: histone H2B [Jatropha curcas]
4 Hb_147752_010 0.1357936833 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
5 Hb_002243_060 0.1387413375 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
6 Hb_007441_260 0.1624669708 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
7 Hb_001240_020 0.1656546144 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
8 Hb_015430_010 0.167380476 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
9 Hb_000302_290 0.167903332 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
10 Hb_000030_200 0.1704649677 - - PREDICTED: early nodulin-93-like [Populus euphratica]
11 Hb_007313_080 0.1710357358 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
12 Hb_007254_080 0.1728894213 - - -
13 Hb_023344_050 0.1750983446 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
14 Hb_005054_260 0.1756117155 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
15 Hb_000445_490 0.1759183988 - - -
16 Hb_000928_130 0.1785632835 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_000110_170 0.1804907845 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_005656_100 0.1806356984 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003880_030 0.1829731986 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
20 Hb_000975_230 0.1833977398 - - hypothetical protein ZEAMMB73_864543 [Zea mays]

Gene co-expression network

sample Hb_002042_080 Hb_002042_080 Hb_001059_120 Hb_001059_120 Hb_002042_080--Hb_001059_120 Hb_000178_120 Hb_000178_120 Hb_002042_080--Hb_000178_120 Hb_147752_010 Hb_147752_010 Hb_002042_080--Hb_147752_010 Hb_002243_060 Hb_002243_060 Hb_002042_080--Hb_002243_060 Hb_007441_260 Hb_007441_260 Hb_002042_080--Hb_007441_260 Hb_001240_020 Hb_001240_020 Hb_002042_080--Hb_001240_020 Hb_001433_110 Hb_001433_110 Hb_001059_120--Hb_001433_110 Hb_001059_120--Hb_147752_010 Hb_004679_060 Hb_004679_060 Hb_001059_120--Hb_004679_060 Hb_007313_080 Hb_007313_080 Hb_001059_120--Hb_007313_080 Hb_000270_740 Hb_000270_740 Hb_001059_120--Hb_000270_740 Hb_023344_050 Hb_023344_050 Hb_000178_120--Hb_023344_050 Hb_000178_120--Hb_007441_260 Hb_002774_050 Hb_002774_050 Hb_000178_120--Hb_002774_050 Hb_010402_050 Hb_010402_050 Hb_000178_120--Hb_010402_050 Hb_000178_120--Hb_002243_060 Hb_147752_010--Hb_001240_020 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_000928_130 Hb_000928_130 Hb_147752_010--Hb_000928_130 Hb_000110_170 Hb_000110_170 Hb_147752_010--Hb_000110_170 Hb_147752_010--Hb_007441_260 Hb_000445_490 Hb_000445_490 Hb_147752_010--Hb_000445_490 Hb_007254_080 Hb_007254_080 Hb_002243_060--Hb_007254_080 Hb_002243_060--Hb_000110_170 Hb_002081_030 Hb_002081_030 Hb_002243_060--Hb_002081_030 Hb_002243_060--Hb_147752_010 Hb_000384_120 Hb_000384_120 Hb_007441_260--Hb_000384_120 Hb_005391_030 Hb_005391_030 Hb_007441_260--Hb_005391_030 Hb_000087_130 Hb_000087_130 Hb_007441_260--Hb_000087_130 Hb_007192_100 Hb_007192_100 Hb_007441_260--Hb_007192_100 Hb_003880_030 Hb_003880_030 Hb_007441_260--Hb_003880_030 Hb_000417_260 Hb_000417_260 Hb_007441_260--Hb_000417_260 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000061_130 Hb_000061_130 Hb_001240_020--Hb_000061_130 Hb_001240_020--Hb_000445_490 Hb_001240_020--Hb_000928_130 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.260788 0.444212 0.526292 1.2071 0.0399063 0.0420281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63163 4.33131 1.41391 1.38625 1.17882

CAGE analysis