Hb_001433_110

Information

Type -
Description -
Location Contig1433: 110156-113897
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01450g
description POPTRDRAFT_570756; hypothetical protein
nr
ID XP_012088965.1
description PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQ47
description Glycine-rich domain-containing protein 1 OS=Arabidopsis thaliana GN=GRDP1 PE=2 SV=1
trembl
ID A0A067JKT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23271 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105647469 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11404: 110470-113014 , PASA_asmbl_11405: 110416-113014 , PASA_asmbl_11406: 113052-113861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_110 0.0 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
2 Hb_004453_080 0.1211654176 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
3 Hb_002374_380 0.1477237999 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
4 Hb_001221_570 0.1550257238 - - -
5 Hb_000252_110 0.156827261 - - -
6 Hb_028487_170 0.1581934787 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
7 Hb_001059_120 0.1654142368 - - NADH dehydrogenase, putative [Ricinus communis]
8 Hb_000031_260 0.1666592293 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
9 Hb_000163_050 0.169901081 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
10 Hb_008948_120 0.1793741556 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
11 Hb_006538_090 0.1836404286 - - PREDICTED: IST1 homolog [Jatropha curcas]
12 Hb_008226_080 0.1850045573 - - Protein LRP16, putative [Ricinus communis]
13 Hb_168893_020 0.1853011022 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
14 Hb_002027_390 0.1881645564 - - shikimate dehydrogenase, putative [Ricinus communis]
15 Hb_000684_520 0.1887400138 - - glutathione S-transferase L3-like [Jatropha curcas]
16 Hb_000139_470 0.1894655536 - - Dual specificity protein phosphatase, putative [Ricinus communis]
17 Hb_000614_170 0.1919341549 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
18 Hb_017170_030 0.1930738156 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
19 Hb_000723_170 0.1938327414 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
20 Hb_007850_080 0.1947403835 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001433_110 Hb_001433_110 Hb_004453_080 Hb_004453_080 Hb_001433_110--Hb_004453_080 Hb_002374_380 Hb_002374_380 Hb_001433_110--Hb_002374_380 Hb_001221_570 Hb_001221_570 Hb_001433_110--Hb_001221_570 Hb_000252_110 Hb_000252_110 Hb_001433_110--Hb_000252_110 Hb_028487_170 Hb_028487_170 Hb_001433_110--Hb_028487_170 Hb_001059_120 Hb_001059_120 Hb_001433_110--Hb_001059_120 Hb_007850_080 Hb_007850_080 Hb_004453_080--Hb_007850_080 Hb_004453_080--Hb_000252_110 Hb_004453_080--Hb_028487_170 Hb_003442_070 Hb_003442_070 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080 Hb_000694_060 Hb_000694_060 Hb_002374_380--Hb_000694_060 Hb_002374_380--Hb_004453_080 Hb_105602_010 Hb_105602_010 Hb_002374_380--Hb_105602_010 Hb_002374_380--Hb_003442_070 Hb_002374_380--Hb_007850_080 Hb_002027_390 Hb_002027_390 Hb_001221_570--Hb_002027_390 Hb_000139_470 Hb_000139_470 Hb_001221_570--Hb_000139_470 Hb_168893_020 Hb_168893_020 Hb_001221_570--Hb_168893_020 Hb_006538_090 Hb_006538_090 Hb_001221_570--Hb_006538_090 Hb_000163_050 Hb_000163_050 Hb_001221_570--Hb_000163_050 Hb_001096_090 Hb_001096_090 Hb_001221_570--Hb_001096_090 Hb_005656_100 Hb_005656_100 Hb_000252_110--Hb_005656_100 Hb_000041_240 Hb_000041_240 Hb_000252_110--Hb_000041_240 Hb_004931_100 Hb_004931_100 Hb_000252_110--Hb_004931_100 Hb_001171_050 Hb_001171_050 Hb_000252_110--Hb_001171_050 Hb_005285_030 Hb_005285_030 Hb_028487_170--Hb_005285_030 Hb_000286_060 Hb_000286_060 Hb_028487_170--Hb_000286_060 Hb_000300_430 Hb_000300_430 Hb_028487_170--Hb_000300_430 Hb_001123_160 Hb_001123_160 Hb_028487_170--Hb_001123_160 Hb_000700_040 Hb_000700_040 Hb_028487_170--Hb_000700_040 Hb_002042_080 Hb_002042_080 Hb_001059_120--Hb_002042_080 Hb_147752_010 Hb_147752_010 Hb_001059_120--Hb_147752_010 Hb_004679_060 Hb_004679_060 Hb_001059_120--Hb_004679_060 Hb_007313_080 Hb_007313_080 Hb_001059_120--Hb_007313_080 Hb_000270_740 Hb_000270_740 Hb_001059_120--Hb_000270_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.855691 2.02146 2.84991 2.93029 0.390948 0.0524256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.41984 6.12994 1.94167 6.34187 2.08194

CAGE analysis