Hb_000252_110

Information

Type -
Description -
Location Contig252: 92232-95695
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0006810
description ap-1 complex subunit mu-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_110 0.0 - - -
2 Hb_004453_080 0.127714181 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
3 Hb_005656_100 0.1431016106 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000041_240 0.1440091618 - - glutaredoxin [Hevea brasiliensis]
5 Hb_004931_100 0.1528512619 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
6 Hb_001171_050 0.153950857 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
7 Hb_001433_110 0.156827261 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
8 Hb_004032_120 0.1599746019 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
9 Hb_007850_080 0.1603628466 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
10 Hb_028487_170 0.1673178959 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
11 Hb_003442_070 0.1709504538 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
12 Hb_004136_030 0.1721145192 - - -
13 Hb_000200_290 0.1722499743 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
14 Hb_000828_050 0.1751191763 - - unnamed protein product [Vitis vinifera]
15 Hb_003040_030 0.1757583473 - - PREDICTED: NADP-dependent malic enzyme isoform X1 [Jatropha curcas]
16 Hb_000345_250 0.1758782639 - - cullin 1-like protein [Hevea brasiliensis]
17 Hb_000009_660 0.1851567771 - - -
18 Hb_005285_030 0.1852272026 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
19 Hb_000673_020 0.1868157635 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
20 Hb_000286_060 0.1871040221 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]

Gene co-expression network

sample Hb_000252_110 Hb_000252_110 Hb_004453_080 Hb_004453_080 Hb_000252_110--Hb_004453_080 Hb_005656_100 Hb_005656_100 Hb_000252_110--Hb_005656_100 Hb_000041_240 Hb_000041_240 Hb_000252_110--Hb_000041_240 Hb_004931_100 Hb_004931_100 Hb_000252_110--Hb_004931_100 Hb_001171_050 Hb_001171_050 Hb_000252_110--Hb_001171_050 Hb_001433_110 Hb_001433_110 Hb_000252_110--Hb_001433_110 Hb_007850_080 Hb_007850_080 Hb_004453_080--Hb_007850_080 Hb_004453_080--Hb_001433_110 Hb_028487_170 Hb_028487_170 Hb_004453_080--Hb_028487_170 Hb_003442_070 Hb_003442_070 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080 Hb_000673_020 Hb_000673_020 Hb_005656_100--Hb_000673_020 Hb_001005_080 Hb_001005_080 Hb_005656_100--Hb_001005_080 Hb_003880_030 Hb_003880_030 Hb_005656_100--Hb_003880_030 Hb_005656_100--Hb_007850_080 Hb_013405_140 Hb_013405_140 Hb_005656_100--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_005656_100--Hb_000175_030 Hb_000041_240--Hb_003442_070 Hb_000041_240--Hb_004453_080 Hb_006153_110 Hb_006153_110 Hb_000041_240--Hb_006153_110 Hb_000041_240--Hb_007850_080 Hb_061195_020 Hb_061195_020 Hb_000041_240--Hb_061195_020 Hb_004931_100--Hb_005656_100 Hb_002374_400 Hb_002374_400 Hb_004931_100--Hb_002374_400 Hb_004931_100--Hb_001005_080 Hb_002217_230 Hb_002217_230 Hb_004931_100--Hb_002217_230 Hb_004128_110 Hb_004128_110 Hb_004931_100--Hb_004128_110 Hb_000707_020 Hb_000707_020 Hb_004931_100--Hb_000707_020 Hb_001171_050--Hb_000673_020 Hb_000934_190 Hb_000934_190 Hb_001171_050--Hb_000934_190 Hb_015183_060 Hb_015183_060 Hb_001171_050--Hb_015183_060 Hb_001171_050--Hb_005656_100 Hb_002016_080 Hb_002016_080 Hb_001171_050--Hb_002016_080 Hb_001171_050--Hb_013405_140 Hb_002374_380 Hb_002374_380 Hb_001433_110--Hb_002374_380 Hb_001221_570 Hb_001221_570 Hb_001433_110--Hb_001221_570 Hb_001433_110--Hb_028487_170 Hb_001059_120 Hb_001059_120 Hb_001433_110--Hb_001059_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.252252 0.361884 0.419028 0.364974 0.115337 0.0868061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86253 1.37597 0.893311 1.50271 0.721694

CAGE analysis