Hb_001221_570

Information

Type -
Description -
Location Contig1221: 370576-371474
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_570 0.0 - - -
2 Hb_002027_390 0.079162595 - - shikimate dehydrogenase, putative [Ricinus communis]
3 Hb_000139_470 0.1258615941 - - Dual specificity protein phosphatase, putative [Ricinus communis]
4 Hb_168893_020 0.1274376856 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
5 Hb_006538_090 0.1283903045 - - PREDICTED: IST1 homolog [Jatropha curcas]
6 Hb_000163_050 0.1486997387 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
7 Hb_001096_090 0.1493367141 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
8 Hb_066720_010 0.1530286987 - - PREDICTED: histone H2B [Jatropha curcas]
9 Hb_001301_110 0.1545387426 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
10 Hb_001433_110 0.1550257238 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
11 Hb_000555_100 0.1572122977 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
12 Hb_007894_170 0.1584160535 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
13 Hb_004005_020 0.1606355099 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_000538_120 0.1632545601 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
15 Hb_004453_080 0.1648736483 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
16 Hb_000684_520 0.167281144 - - glutathione S-transferase L3-like [Jatropha curcas]
17 Hb_001369_250 0.1673966643 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
18 Hb_000302_140 0.16744744 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
19 Hb_000085_350 0.1678436176 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
20 Hb_000270_180 0.1678477062 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_001221_570 Hb_001221_570 Hb_002027_390 Hb_002027_390 Hb_001221_570--Hb_002027_390 Hb_000139_470 Hb_000139_470 Hb_001221_570--Hb_000139_470 Hb_168893_020 Hb_168893_020 Hb_001221_570--Hb_168893_020 Hb_006538_090 Hb_006538_090 Hb_001221_570--Hb_006538_090 Hb_000163_050 Hb_000163_050 Hb_001221_570--Hb_000163_050 Hb_001096_090 Hb_001096_090 Hb_001221_570--Hb_001096_090 Hb_002027_390--Hb_006538_090 Hb_007894_170 Hb_007894_170 Hb_002027_390--Hb_007894_170 Hb_003041_050 Hb_003041_050 Hb_002027_390--Hb_003041_050 Hb_000555_100 Hb_000555_100 Hb_002027_390--Hb_000555_100 Hb_002027_390--Hb_168893_020 Hb_001728_040 Hb_001728_040 Hb_000139_470--Hb_001728_040 Hb_000847_060 Hb_000847_060 Hb_000139_470--Hb_000847_060 Hb_002301_160 Hb_002301_160 Hb_000139_470--Hb_002301_160 Hb_000139_470--Hb_006538_090 Hb_000155_160 Hb_000155_160 Hb_000139_470--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000139_470--Hb_002239_050 Hb_168893_020--Hb_006538_090 Hb_000210_060 Hb_000210_060 Hb_168893_020--Hb_000210_060 Hb_168893_020--Hb_000555_100 Hb_001369_250 Hb_001369_250 Hb_168893_020--Hb_001369_250 Hb_002477_290 Hb_002477_290 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040 Hb_004005_020 Hb_004005_020 Hb_006538_090--Hb_004005_020 Hb_000538_120 Hb_000538_120 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_015057_020 Hb_015057_020 Hb_006538_090--Hb_015057_020 Hb_003058_120 Hb_003058_120 Hb_006538_090--Hb_003058_120 Hb_009075_010 Hb_009075_010 Hb_000163_050--Hb_009075_010 Hb_000085_350 Hb_000085_350 Hb_000163_050--Hb_000085_350 Hb_003020_150 Hb_003020_150 Hb_000163_050--Hb_003020_150 Hb_000163_050--Hb_000538_120 Hb_000739_140 Hb_000739_140 Hb_000163_050--Hb_000739_140 Hb_000413_280 Hb_000413_280 Hb_000163_050--Hb_000413_280 Hb_001096_090--Hb_000085_350 Hb_000302_140 Hb_000302_140 Hb_001096_090--Hb_000302_140 Hb_002228_070 Hb_002228_070 Hb_001096_090--Hb_002228_070 Hb_131181_010 Hb_131181_010 Hb_001096_090--Hb_131181_010 Hb_001016_150 Hb_001016_150 Hb_001096_090--Hb_001016_150 Hb_001096_090--Hb_000538_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148811 0.54003 1.17572 0.85699 0.230314 0.213726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36 1.28209 0.3614 1.20013 0.398753

CAGE analysis