Hb_002228_070

Information

Type -
Description -
Location Contig2228: 58822-61742
Sequence    

Annotation

kegg
ID rcu:RCOM_1022280
description inosine triphosphate pyrophosphatase, putative (EC:3.6.1.19)
nr
ID XP_002518147.1
description inosine triphosphate pyrophosphatase, putative [Ricinus communis]
swissprot
ID F6HS55
description Inosine triphosphate pyrophosphatase OS=Vitis vinifera GN=VIT_05s0051g00580 PE=2 SV=1
trembl
ID B9RWM8
description Inosine triphosphate pyrophosphatase OS=Ricinus communis GN=RCOM_1022280 PE=3 SV=1
Gene Ontology
ID GO:0005737
description inosine triphosphate pyrophosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23068: 58834-61594 , PASA_asmbl_23069: 58855-61587
cDNA
(Sanger)
(ID:Location)		 022_F20.ab1: 58835-60811 , 049_C24.ab1: 58836-61055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002228_070 0.0 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
2 Hb_000402_160 0.0617446664 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
3 Hb_020025_040 0.0885644738 - - sodium-bile acid cotransporter, putative [Ricinus communis]
4 Hb_000302_140 0.0911223108 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
5 Hb_001096_090 0.0946852445 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
6 Hb_001341_150 0.0986880643 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
7 Hb_010098_050 0.1007553403 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
8 Hb_003362_030 0.1025982994 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
9 Hb_002374_080 0.1052508971 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
10 Hb_001493_050 0.107071619 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
11 Hb_003207_180 0.1074139514 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
12 Hb_000457_180 0.1114303561 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
13 Hb_000538_120 0.1137066171 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
14 Hb_000331_430 0.1154506726 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
15 Hb_004041_020 0.1163199136 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
16 Hb_055062_020 0.1166939312 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
17 Hb_007894_170 0.1169339604 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
18 Hb_002226_060 0.1169703455 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
19 Hb_066720_010 0.1174081919 - - PREDICTED: histone H2B [Jatropha curcas]
20 Hb_000413_280 0.120591273 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002228_070 Hb_002228_070 Hb_000402_160 Hb_000402_160 Hb_002228_070--Hb_000402_160 Hb_020025_040 Hb_020025_040 Hb_002228_070--Hb_020025_040 Hb_000302_140 Hb_000302_140 Hb_002228_070--Hb_000302_140 Hb_001096_090 Hb_001096_090 Hb_002228_070--Hb_001096_090 Hb_001341_150 Hb_001341_150 Hb_002228_070--Hb_001341_150 Hb_010098_050 Hb_010098_050 Hb_002228_070--Hb_010098_050 Hb_001493_050 Hb_001493_050 Hb_000402_160--Hb_001493_050 Hb_002226_060 Hb_002226_060 Hb_000402_160--Hb_002226_060 Hb_000402_160--Hb_001341_150 Hb_000402_160--Hb_010098_050 Hb_000402_160--Hb_000302_140 Hb_000236_040 Hb_000236_040 Hb_020025_040--Hb_000236_040 Hb_020025_040--Hb_010098_050 Hb_022250_060 Hb_022250_060 Hb_020025_040--Hb_022250_060 Hb_002217_350 Hb_002217_350 Hb_020025_040--Hb_002217_350 Hb_006615_240 Hb_006615_240 Hb_020025_040--Hb_006615_240 Hb_000571_020 Hb_000571_020 Hb_000302_140--Hb_000571_020 Hb_000538_120 Hb_000538_120 Hb_000302_140--Hb_000538_120 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_001096_090--Hb_000085_350 Hb_001096_090--Hb_000302_140 Hb_131181_010 Hb_131181_010 Hb_001096_090--Hb_131181_010 Hb_001016_150 Hb_001016_150 Hb_001096_090--Hb_001016_150 Hb_001096_090--Hb_000538_120 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_001341_150--Hb_010098_050 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_001341_150--Hb_028396_010 Hb_010098_050--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.8695 74.3995 273.696 116.788 81.5999 85.5828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
218.571 259.61 168.035 163.609 74.1781

CAGE analysis