Hb_000402_160

Information

Type -
Description -
Location Contig402: 158141-162192
Sequence    

Annotation

kegg
ID rcu:RCOM_0024540
description Ribose-phosphate pyrophosphokinase, putative (EC:2.7.6.1)
nr
ID XP_012085467.1
description PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
swissprot
ID Q93Z66
description Ribose-phosphate pyrophosphokinase 3, chloroplastic OS=Arabidopsis thaliana GN=PRS3 PE=2 SV=1
trembl
ID A0A067K323
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17803 PE=3 SV=1
Gene Ontology
ID GO:0000287
description ribose-phosphate pyrophosphokinase 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39931: 158178-162297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_160 0.0 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
2 Hb_002228_070 0.0617446664 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
3 Hb_001493_050 0.0716692101 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
4 Hb_002226_060 0.0753701022 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
5 Hb_001341_150 0.0783495627 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
6 Hb_010098_050 0.0800228122 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
7 Hb_000302_140 0.0867533534 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
8 Hb_000827_050 0.0918125137 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_011512_070 0.0933969992 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
10 Hb_001931_010 0.0956383603 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
11 Hb_006615_240 0.0972825789 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
12 Hb_004058_030 0.0973778693 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
13 Hb_002163_050 0.0980428706 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
14 Hb_006573_190 0.0982016495 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
15 Hb_000457_180 0.0983227345 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
16 Hb_001863_380 0.0984044503 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
17 Hb_000236_040 0.0993111725 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
18 Hb_014720_110 0.1002640739 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
19 Hb_005446_010 0.1008455547 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
20 Hb_000329_200 0.1017233172 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]

Gene co-expression network

sample Hb_000402_160 Hb_000402_160 Hb_002228_070 Hb_002228_070 Hb_000402_160--Hb_002228_070 Hb_001493_050 Hb_001493_050 Hb_000402_160--Hb_001493_050 Hb_002226_060 Hb_002226_060 Hb_000402_160--Hb_002226_060 Hb_001341_150 Hb_001341_150 Hb_000402_160--Hb_001341_150 Hb_010098_050 Hb_010098_050 Hb_000402_160--Hb_010098_050 Hb_000302_140 Hb_000302_140 Hb_000402_160--Hb_000302_140 Hb_020025_040 Hb_020025_040 Hb_002228_070--Hb_020025_040 Hb_002228_070--Hb_000302_140 Hb_001096_090 Hb_001096_090 Hb_002228_070--Hb_001096_090 Hb_002228_070--Hb_001341_150 Hb_002228_070--Hb_010098_050 Hb_004157_020 Hb_004157_020 Hb_001493_050--Hb_004157_020 Hb_000676_390 Hb_000676_390 Hb_001493_050--Hb_000676_390 Hb_001493_050--Hb_002226_060 Hb_000731_190 Hb_000731_190 Hb_001493_050--Hb_000731_190 Hb_002540_080 Hb_002540_080 Hb_001493_050--Hb_002540_080 Hb_011512_070 Hb_011512_070 Hb_002226_060--Hb_011512_070 Hb_000656_240 Hb_000656_240 Hb_002226_060--Hb_000656_240 Hb_002226_060--Hb_001341_150 Hb_003018_010 Hb_003018_010 Hb_002226_060--Hb_003018_010 Hb_000529_030 Hb_000529_030 Hb_002226_060--Hb_000529_030 Hb_001279_080 Hb_001279_080 Hb_002226_060--Hb_001279_080 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_010098_050--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050 Hb_000571_020 Hb_000571_020 Hb_000302_140--Hb_000571_020 Hb_000538_120 Hb_000538_120 Hb_000302_140--Hb_000538_120 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_000302_140--Hb_028396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5429 9.49944 29.7013 13.4083 13.8268 10.0843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.134 35.8703 21.708 19.2018 12.9194

CAGE analysis