Hb_000085_350

Information

Type -
Description -
Location Contig85: 302106-308019
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37130g
description POPTRDRAFT_175964; hypothetical protein
nr
ID XP_012070953.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
swissprot
ID Q94EH2
description Mitochondrial import inner membrane translocase subunit TIM22-2 OS=Arabidopsis thaliana GN=TIM22-2 PE=1 SV=1
trembl
ID A0A067L595
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00986 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim22-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60379: 302099-307995 , PASA_asmbl_60380: 303208-303399 , PASA_asmbl_60381: 304252-304444 , PASA_asmbl_60382: 306443-306827
cDNA
(Sanger)
(ID:Location)		 001_N09.ab1: 302205-307994 , 013_K16.ab1: 302202-307994 , 052_K18.ab1: 302307-307995

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_350 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
2 Hb_007747_050 0.0721123421 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
3 Hb_000538_120 0.0765120679 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
4 Hb_000735_090 0.0767485036 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
5 Hb_000155_160 0.0780843553 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
6 Hb_000302_140 0.0805245517 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
7 Hb_002811_170 0.0810442937 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
8 Hb_000163_050 0.0814389804 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
9 Hb_003494_050 0.0862475787 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
10 Hb_001096_090 0.0863486416 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
11 Hb_000571_020 0.0870753135 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
12 Hb_001863_430 0.0874312557 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
13 Hb_028396_010 0.0893296725 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
14 Hb_003018_020 0.0929743475 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
15 Hb_091433_020 0.0945635481 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
16 Hb_007894_060 0.0947546475 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
17 Hb_002613_020 0.0962973906 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
18 Hb_007928_030 0.0967514043 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
19 Hb_000431_070 0.0974349799 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
20 Hb_026053_020 0.0985701617 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_350 Hb_000085_350 Hb_007747_050 Hb_007747_050 Hb_000085_350--Hb_007747_050 Hb_000538_120 Hb_000538_120 Hb_000085_350--Hb_000538_120 Hb_000735_090 Hb_000735_090 Hb_000085_350--Hb_000735_090 Hb_000155_160 Hb_000155_160 Hb_000085_350--Hb_000155_160 Hb_000302_140 Hb_000302_140 Hb_000085_350--Hb_000302_140 Hb_002811_170 Hb_002811_170 Hb_000085_350--Hb_002811_170 Hb_007747_050--Hb_002811_170 Hb_000419_020 Hb_000419_020 Hb_007747_050--Hb_000419_020 Hb_007747_050--Hb_000735_090 Hb_003494_050 Hb_003494_050 Hb_007747_050--Hb_003494_050 Hb_001863_430 Hb_001863_430 Hb_007747_050--Hb_001863_430 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_000538_120--Hb_000302_140 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_001989_090 Hb_001989_090 Hb_000735_090--Hb_001989_090 Hb_007065_010 Hb_007065_010 Hb_000735_090--Hb_007065_010 Hb_000735_090--Hb_003494_050 Hb_000016_080 Hb_000016_080 Hb_000735_090--Hb_000016_080 Hb_000155_160--Hb_000419_020 Hb_000155_160--Hb_007747_050 Hb_000847_060 Hb_000847_060 Hb_000155_160--Hb_000847_060 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_000302_140--Hb_000571_020 Hb_001341_150 Hb_001341_150 Hb_000302_140--Hb_001341_150 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_002811_170--Hb_001863_430 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_001016_150 Hb_001016_150 Hb_002811_170--Hb_001016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2365 11.566 31.869 29.9683 11.2126 16.6487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.9343 77.0113 23.0862 32.8585 21.6059

CAGE analysis