Hb_004005_020

Information

Type -
Description -
Location Contig4005: 41165-45089
Sequence    

Annotation

kegg
ID tcc:TCM_037929
description Nudix hydrolase isoform 2
nr
ID XP_012078666.1
description PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID Q8VXZ0
description Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1
trembl
ID A0A061GUR4
description Nudix hydrolase, putative isoform 1 OS=Theobroma cacao GN=TCM_037929 PE=4 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39826: 41251-42465 , PASA_asmbl_39827: 43552-44777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004005_020 0.0 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_006538_090 0.0912416561 - - PREDICTED: IST1 homolog [Jatropha curcas]
3 Hb_000723_230 0.0984283757 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
4 Hb_006637_030 0.1011257429 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
5 Hb_168893_020 0.1070851969 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
6 Hb_001016_100 0.1132903632 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
7 Hb_000853_150 0.1161986343 - - Fumarase 1 isoform 2 [Theobroma cacao]
8 Hb_000076_220 0.1163792814 - - thioredoxin domain-containing protein, putative [Ricinus communis]
9 Hb_002693_030 0.1190634221 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
10 Hb_002701_010 0.119224006 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_000538_120 0.1214591509 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
12 Hb_000210_060 0.1215423038 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
13 Hb_017491_020 0.1228982447 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
14 Hb_001804_080 0.1247915764 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
15 Hb_000920_200 0.1250596043 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
16 Hb_002307_310 0.1253180671 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
17 Hb_002477_290 0.1261000889 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
18 Hb_015057_020 0.1266641288 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
19 Hb_000774_020 0.1267744396 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
20 Hb_001728_040 0.1274990116 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]

Gene co-expression network

sample Hb_004005_020 Hb_004005_020 Hb_006538_090 Hb_006538_090 Hb_004005_020--Hb_006538_090 Hb_000723_230 Hb_000723_230 Hb_004005_020--Hb_000723_230 Hb_006637_030 Hb_006637_030 Hb_004005_020--Hb_006637_030 Hb_168893_020 Hb_168893_020 Hb_004005_020--Hb_168893_020 Hb_001016_100 Hb_001016_100 Hb_004005_020--Hb_001016_100 Hb_000853_150 Hb_000853_150 Hb_004005_020--Hb_000853_150 Hb_006538_090--Hb_168893_020 Hb_000538_120 Hb_000538_120 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_015057_020 Hb_015057_020 Hb_006538_090--Hb_015057_020 Hb_003058_120 Hb_003058_120 Hb_006538_090--Hb_003058_120 Hb_000723_230--Hb_006637_030 Hb_005653_070 Hb_005653_070 Hb_000723_230--Hb_005653_070 Hb_001728_040 Hb_001728_040 Hb_000723_230--Hb_001728_040 Hb_000465_300 Hb_000465_300 Hb_000723_230--Hb_000465_300 Hb_000684_040 Hb_000684_040 Hb_000723_230--Hb_000684_040 Hb_006060_020 Hb_006060_020 Hb_000723_230--Hb_006060_020 Hb_002693_030 Hb_002693_030 Hb_006637_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_006637_030--Hb_053709_050 Hb_026198_010 Hb_026198_010 Hb_006637_030--Hb_026198_010 Hb_189216_010 Hb_189216_010 Hb_006637_030--Hb_189216_010 Hb_006637_030--Hb_005653_070 Hb_000210_060 Hb_000210_060 Hb_168893_020--Hb_000210_060 Hb_000555_100 Hb_000555_100 Hb_168893_020--Hb_000555_100 Hb_001369_250 Hb_001369_250 Hb_168893_020--Hb_001369_250 Hb_002477_290 Hb_002477_290 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_001016_100--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_001016_100--Hb_000920_200 Hb_003360_040 Hb_003360_040 Hb_001016_100--Hb_003360_040 Hb_000140_090 Hb_000140_090 Hb_001016_100--Hb_000140_090 Hb_002968_040 Hb_002968_040 Hb_001016_100--Hb_002968_040 Hb_000964_030 Hb_000964_030 Hb_001016_100--Hb_000964_030 Hb_000853_150--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000853_150--Hb_001218_030 Hb_005588_060 Hb_005588_060 Hb_000853_150--Hb_005588_060 Hb_001828_150 Hb_001828_150 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49076 2.22769 5.2185 4.36894 1.03877 1.0971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60424 5.75083 3.41795 5.39617 2.00086

CAGE analysis