Hb_000920_200

Information

Type -
Description -
Location Contig920: 117606-121254
Sequence    

Annotation

kegg
ID rcu:RCOM_1452850
description Ubiquitin ligase SINAT5, putative
nr
ID XP_012068636.1
description PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S3N1
description E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2
trembl
ID A0A067KWI1
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_24516 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62408: 118223-118841 , PASA_asmbl_62409: 118980-119433 , PASA_asmbl_62410: 117805-119510 , PASA_asmbl_62411: 119606-120918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_200 0.0 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
2 Hb_001218_030 0.0580742564 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
3 Hb_002119_130 0.0690784811 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
4 Hb_006573_190 0.0696975647 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
5 Hb_001828_150 0.0720281886 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
6 Hb_000853_150 0.0748146159 - - Fumarase 1 isoform 2 [Theobroma cacao]
7 Hb_001195_060 0.0749482892 - - Protein yrdA, putative [Ricinus communis]
8 Hb_005765_050 0.077569441 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
9 Hb_005167_010 0.0791312022 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
10 Hb_003622_040 0.0798820036 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
11 Hb_000774_020 0.082542108 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
12 Hb_014720_110 0.0825751133 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
13 Hb_000665_140 0.08435874 - - PREDICTED: protein MEMO1 [Jatropha curcas]
14 Hb_005054_210 0.0848489483 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
15 Hb_003360_040 0.0852449022 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
16 Hb_000173_410 0.0854293759 - - PREDICTED: BI1-like protein [Jatropha curcas]
17 Hb_007218_120 0.0854570542 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
18 Hb_000140_090 0.0871160672 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
19 Hb_001019_100 0.0880786758 - - BnaC02g13240D [Brassica napus]
20 Hb_000928_070 0.0889843095 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000920_200 Hb_000920_200 Hb_001218_030 Hb_001218_030 Hb_000920_200--Hb_001218_030 Hb_002119_130 Hb_002119_130 Hb_000920_200--Hb_002119_130 Hb_006573_190 Hb_006573_190 Hb_000920_200--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_000920_200--Hb_001828_150 Hb_000853_150 Hb_000853_150 Hb_000920_200--Hb_000853_150 Hb_001195_060 Hb_001195_060 Hb_000920_200--Hb_001195_060 Hb_001218_030--Hb_000853_150 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260 Hb_007218_120 Hb_007218_120 Hb_002119_130--Hb_007218_120 Hb_003360_040 Hb_003360_040 Hb_002119_130--Hb_003360_040 Hb_002119_130--Hb_001218_030 Hb_000173_410 Hb_000173_410 Hb_002119_130--Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_002119_130--Hb_000454_090 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_000003_230 Hb_000003_230 Hb_006573_190--Hb_000003_230 Hb_004586_420 Hb_004586_420 Hb_006573_190--Hb_004586_420 Hb_003582_060 Hb_003582_060 Hb_006573_190--Hb_003582_060 Hb_006573_190--Hb_001828_150 Hb_000390_300 Hb_000390_300 Hb_006573_190--Hb_000390_300 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_003058_120 Hb_003058_120 Hb_000853_150--Hb_003058_120 Hb_005588_060 Hb_005588_060 Hb_000853_150--Hb_005588_060 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_005167_010 Hb_005167_010 Hb_001195_060--Hb_005167_010 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_012799_170 Hb_012799_170 Hb_001195_060--Hb_012799_170 Hb_000127_140 Hb_000127_140 Hb_001195_060--Hb_000127_140 Hb_004545_110 Hb_004545_110 Hb_001195_060--Hb_004545_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15362 3.4411 8.76259 8.39406 3.78363 3.47252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.4387 10.0214 9.11675 7.87014 6.87196

CAGE analysis