Hb_001301_110

Information

Type -
Description -
Location Contig1301: 91747-95248
Sequence    

Annotation

kegg
ID rcu:RCOM_0585710
description Vacuolar sorting protein SNF8, putative
nr
ID XP_012070790.1
description PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
swissprot
ID Q5M759
description Vacuolar protein sorting-associated protein 22 homolog 1 OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2
trembl
ID A0A067KVS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00860 PE=4 SV=1
Gene Ontology
ID GO:0000814
description vacuolar protein sorting-associated protein 22 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09004: 86559-91262 , PASA_asmbl_09005: 91724-95148
cDNA
(Sanger)
(ID:Location)		 025_O04.ab1: 91724-94315

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_110 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
2 Hb_000069_720 0.0507992391 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
3 Hb_004157_050 0.0513233925 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
4 Hb_005588_060 0.0707612825 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
5 Hb_000665_140 0.0707755399 - - PREDICTED: protein MEMO1 [Jatropha curcas]
6 Hb_000167_010 0.0711248847 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007894_060 0.0731573032 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
8 Hb_000460_030 0.0775467892 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
9 Hb_003058_120 0.0782572039 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
10 Hb_003678_020 0.0790318764 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000948_160 0.0812812053 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
12 Hb_001218_030 0.0820208541 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
13 Hb_001123_040 0.0824107097 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
14 Hb_007928_030 0.0829773201 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
15 Hb_000853_150 0.0838232695 - - Fumarase 1 isoform 2 [Theobroma cacao]
16 Hb_000665_050 0.0843952906 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
17 Hb_006570_080 0.0846262795 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
18 Hb_003465_030 0.0850731025 - - conserved hypothetical protein [Ricinus communis]
19 Hb_023001_040 0.0876218773 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
20 Hb_007894_170 0.0881609425 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]

Gene co-expression network

sample Hb_001301_110 Hb_001301_110 Hb_000069_720 Hb_000069_720 Hb_001301_110--Hb_000069_720 Hb_004157_050 Hb_004157_050 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_000167_010 Hb_000167_010 Hb_001301_110--Hb_000167_010 Hb_007894_060 Hb_007894_060 Hb_001301_110--Hb_007894_060 Hb_000069_720--Hb_004157_050 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_004157_050--Hb_000665_140 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_003058_120 Hb_003058_120 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090 Hb_005588_060--Hb_003058_120 Hb_002936_010 Hb_002936_010 Hb_005588_060--Hb_002936_010 Hb_006570_080 Hb_006570_080 Hb_005588_060--Hb_006570_080 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_000173_280 Hb_000173_280 Hb_005588_060--Hb_000173_280 Hb_023001_040 Hb_023001_040 Hb_005588_060--Hb_023001_040 Hb_000665_140--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000665_140--Hb_001218_030 Hb_000853_150 Hb_000853_150 Hb_000665_140--Hb_000853_150 Hb_000665_140--Hb_000167_010 Hb_000167_010--Hb_003058_120 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150 Hb_000167_010--Hb_023001_040 Hb_007928_030 Hb_007928_030 Hb_007894_060--Hb_007928_030 Hb_000538_120 Hb_000538_120 Hb_007894_060--Hb_000538_120 Hb_002301_150 Hb_002301_150 Hb_007894_060--Hb_002301_150 Hb_000136_260 Hb_000136_260 Hb_007894_060--Hb_000136_260 Hb_007894_060--Hb_000069_720
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04404 9.05088 12.7203 13.5091 6.69521 7.76112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0357 17.1505 9.80268 16.8076 10.683

CAGE analysis