Hb_003041_050

Information

Type -
Description -
Location Contig3041: 100014-110085
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32085: 101210-101490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003041_050 0.0 - - -
2 Hb_007894_170 0.0802249888 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
3 Hb_009787_030 0.1045092154 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
4 Hb_001427_160 0.1069974849 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_011344_120 0.1076404336 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
6 Hb_001301_110 0.1104575206 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
7 Hb_055320_010 0.1105860998 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
8 Hb_023732_030 0.1109485503 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
9 Hb_000028_350 0.1120692565 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
10 Hb_000431_170 0.1124833483 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
11 Hb_007928_030 0.1126218708 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
12 Hb_006816_260 0.1126623502 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
13 Hb_005391_040 0.1131335342 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
14 Hb_002042_150 0.1171896242 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
15 Hb_028396_010 0.1174961225 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
16 Hb_000347_240 0.1176209223 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
17 Hb_005588_060 0.1178490802 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
18 Hb_000312_080 0.11800823 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
19 Hb_001623_060 0.1200292479 - - potassium channel beta, putative [Ricinus communis]
20 Hb_004734_040 0.121139003 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]

Gene co-expression network

sample Hb_003041_050 Hb_003041_050 Hb_007894_170 Hb_007894_170 Hb_003041_050--Hb_007894_170 Hb_009787_030 Hb_009787_030 Hb_003041_050--Hb_009787_030 Hb_001427_160 Hb_001427_160 Hb_003041_050--Hb_001427_160 Hb_011344_120 Hb_011344_120 Hb_003041_050--Hb_011344_120 Hb_001301_110 Hb_001301_110 Hb_003041_050--Hb_001301_110 Hb_055320_010 Hb_055320_010 Hb_003041_050--Hb_055320_010 Hb_028396_010 Hb_028396_010 Hb_007894_170--Hb_028396_010 Hb_000538_120 Hb_000538_120 Hb_007894_170--Hb_000538_120 Hb_000045_310 Hb_000045_310 Hb_007894_170--Hb_000045_310 Hb_007894_170--Hb_001301_110 Hb_007894_060 Hb_007894_060 Hb_007894_170--Hb_007894_060 Hb_009787_030--Hb_001427_160 Hb_001366_370 Hb_001366_370 Hb_009787_030--Hb_001366_370 Hb_009787_030--Hb_011344_120 Hb_000141_080 Hb_000141_080 Hb_009787_030--Hb_000141_080 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_002053_140 Hb_002053_140 Hb_009787_030--Hb_002053_140 Hb_001427_160--Hb_002053_140 Hb_000510_300 Hb_000510_300 Hb_001427_160--Hb_000510_300 Hb_003994_230 Hb_003994_230 Hb_001427_160--Hb_003994_230 Hb_001427_160--Hb_001366_370 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060 Hb_007928_030 Hb_007928_030 Hb_011344_120--Hb_007928_030 Hb_005914_170 Hb_005914_170 Hb_011344_120--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_011344_120--Hb_001189_070 Hb_004108_220 Hb_004108_220 Hb_011344_120--Hb_004108_220 Hb_000347_240 Hb_000347_240 Hb_011344_120--Hb_000347_240 Hb_000069_720 Hb_000069_720 Hb_001301_110--Hb_000069_720 Hb_004157_050 Hb_004157_050 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_000167_010 Hb_000167_010 Hb_001301_110--Hb_000167_010 Hb_001301_110--Hb_007894_060 Hb_002849_200 Hb_002849_200 Hb_055320_010--Hb_002849_200 Hb_000903_060 Hb_000903_060 Hb_055320_010--Hb_000903_060 Hb_000312_080 Hb_000312_080 Hb_055320_010--Hb_000312_080 Hb_009687_010 Hb_009687_010 Hb_055320_010--Hb_009687_010 Hb_002027_390 Hb_002027_390 Hb_055320_010--Hb_002027_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.430111 0.434492 0.960061 1.58752 0.945469 0.58653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68651 1.53067 0.820284 1.50039 0.561436

CAGE analysis