Hb_002849_200

Information

Type -
Description -
Location Contig2849: 196441-197387
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01740g
description POPTRDRAFT_560196; hypothetical protein
nr
ID KDP41305.1
description hypothetical protein JCGZ_15712 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9Y4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15712 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh-ubiquinone oxidoreductase kda subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29846: 196637-197381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_200 0.0 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
2 Hb_000414_130 0.1080060483 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
3 Hb_000665_050 0.1105956258 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
4 Hb_003622_040 0.1132197316 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
5 Hb_003266_100 0.1147604549 - - Isomerase protein [Gossypium arboreum]
6 Hb_000820_090 0.1149304681 - - -
7 Hb_000258_260 0.1177313201 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
8 Hb_001653_020 0.117784254 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
9 Hb_000483_260 0.1188945789 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
10 Hb_009687_010 0.1191166611 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
11 Hb_000174_210 0.1191289318 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
12 Hb_011344_190 0.1196236661 - - PREDICTED: maspardin [Jatropha curcas]
13 Hb_005285_030 0.1202068674 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
14 Hb_005305_110 0.1203706705 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
15 Hb_003994_260 0.1205154647 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
16 Hb_002014_020 0.1208116964 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
17 Hb_000028_590 0.1216249389 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
18 Hb_003633_050 0.1222343649 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
19 Hb_000103_270 0.1222602015 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
20 Hb_003041_050 0.1229308767 - - -

Gene co-expression network

sample Hb_002849_200 Hb_002849_200 Hb_000414_130 Hb_000414_130 Hb_002849_200--Hb_000414_130 Hb_000665_050 Hb_000665_050 Hb_002849_200--Hb_000665_050 Hb_003622_040 Hb_003622_040 Hb_002849_200--Hb_003622_040 Hb_003266_100 Hb_003266_100 Hb_002849_200--Hb_003266_100 Hb_000820_090 Hb_000820_090 Hb_002849_200--Hb_000820_090 Hb_000258_260 Hb_000258_260 Hb_002849_200--Hb_000258_260 Hb_001653_020 Hb_001653_020 Hb_000414_130--Hb_001653_020 Hb_015778_010 Hb_015778_010 Hb_000414_130--Hb_015778_010 Hb_000414_130--Hb_000665_050 Hb_000030_030 Hb_000030_030 Hb_000414_130--Hb_000030_030 Hb_003502_060 Hb_003502_060 Hb_000414_130--Hb_003502_060 Hb_005306_180 Hb_005306_180 Hb_000414_130--Hb_005306_180 Hb_000665_050--Hb_005306_180 Hb_001218_030 Hb_001218_030 Hb_000665_050--Hb_001218_030 Hb_001301_110 Hb_001301_110 Hb_000665_050--Hb_001301_110 Hb_000460_030 Hb_000460_030 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150 Hb_001123_160 Hb_001123_160 Hb_003622_040--Hb_001123_160 Hb_005054_210 Hb_005054_210 Hb_003622_040--Hb_005054_210 Hb_000934_190 Hb_000934_190 Hb_003622_040--Hb_000934_190 Hb_000300_430 Hb_000300_430 Hb_003622_040--Hb_000300_430 Hb_008232_010 Hb_008232_010 Hb_003622_040--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_003622_040--Hb_011344_190 Hb_004064_010 Hb_004064_010 Hb_003266_100--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_003266_100--Hb_000621_020 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_109002_020 Hb_109002_020 Hb_003266_100--Hb_109002_020 Hb_003266_100--Hb_000665_050 Hb_000291_080 Hb_000291_080 Hb_000820_090--Hb_000291_080 Hb_005488_200 Hb_005488_200 Hb_000820_090--Hb_005488_200 Hb_000820_090--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000820_090--Hb_000982_080 Hb_002111_040 Hb_002111_040 Hb_000820_090--Hb_002111_040 Hb_004672_010 Hb_004672_010 Hb_000820_090--Hb_004672_010 Hb_003994_260 Hb_003994_260 Hb_000258_260--Hb_003994_260 Hb_001195_200 Hb_001195_200 Hb_000258_260--Hb_001195_200 Hb_012490_070 Hb_012490_070 Hb_000258_260--Hb_012490_070 Hb_000069_420 Hb_000069_420 Hb_000258_260--Hb_000069_420 Hb_000258_260--Hb_000982_080 Hb_034406_030 Hb_034406_030 Hb_000258_260--Hb_034406_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8192 11.5019 14.0411 25.4256 18.0249 8.39709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.5301 30.2192 32.8992 38.9078 10.2787

CAGE analysis