Hb_109002_020

Information

Type -
Description -
Location Contig109002: 11889-18332
Sequence    

Annotation

kegg
ID rcu:RCOM_1559600
description ctp synthase, putative (EC:6.3.4.2)
nr
ID XP_012069353.1
description PREDICTED: CTP synthase-like [Jatropha curcas]
swissprot
ID Q54V77
description CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1
trembl
ID A0A067KW84
description CTP synthase OS=Jatropha curcas GN=JCGZ_03767 PE=3 SV=1
Gene Ontology
ID GO:0005829
description ctp synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02764: 12050-16022 , PASA_asmbl_02765: 13759-14153 , PASA_asmbl_02766: 15327-16174 , PASA_asmbl_02767: 17632-18202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109002_020 0.0 - - PREDICTED: CTP synthase-like [Jatropha curcas]
2 Hb_000175_540 0.1010190902 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
3 Hb_000504_070 0.1048714445 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
4 Hb_004064_010 0.1060790105 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
5 Hb_000103_270 0.1065594566 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
6 Hb_000621_020 0.1074261939 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
7 Hb_003266_100 0.1074521725 - - Isomerase protein [Gossypium arboreum]
8 Hb_001021_080 0.1117027379 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
9 Hb_006114_010 0.1144865416 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
10 Hb_002311_340 0.1162332401 - - phospholipase d zeta, putative [Ricinus communis]
11 Hb_008147_070 0.1166705946 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
12 Hb_008173_110 0.1180313162 - - DNA binding protein, putative [Ricinus communis]
13 Hb_108329_020 0.1186491063 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
14 Hb_002889_030 0.1194855891 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
15 Hb_000210_120 0.1197272104 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
16 Hb_028227_070 0.1202225536 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
17 Hb_002400_410 0.1211251516 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
18 Hb_119494_010 0.1212863082 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
19 Hb_002481_080 0.1213031356 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
20 Hb_000096_160 0.1217365135 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]

Gene co-expression network

sample Hb_109002_020 Hb_109002_020 Hb_000175_540 Hb_000175_540 Hb_109002_020--Hb_000175_540 Hb_000504_070 Hb_000504_070 Hb_109002_020--Hb_000504_070 Hb_004064_010 Hb_004064_010 Hb_109002_020--Hb_004064_010 Hb_000103_270 Hb_000103_270 Hb_109002_020--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_109002_020--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_109002_020--Hb_003266_100 Hb_001215_040 Hb_001215_040 Hb_000175_540--Hb_001215_040 Hb_000175_540--Hb_000504_070 Hb_004453_050 Hb_004453_050 Hb_000175_540--Hb_004453_050 Hb_028227_070 Hb_028227_070 Hb_000175_540--Hb_028227_070 Hb_000023_280 Hb_000023_280 Hb_000175_540--Hb_000023_280 Hb_000504_070--Hb_028227_070 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_004064_010--Hb_003266_100 Hb_105602_010 Hb_105602_010 Hb_004064_010--Hb_105602_010 Hb_004064_010--Hb_000621_020 Hb_001341_100 Hb_001341_100 Hb_004064_010--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_004064_010--Hb_001486_030 Hb_000210_120 Hb_000210_120 Hb_000103_270--Hb_000210_120 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000096_160 Hb_000096_160 Hb_000103_270--Hb_000096_160 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_003098_020 Hb_003098_020 Hb_000103_270--Hb_003098_020 Hb_000621_020--Hb_003266_100 Hb_000621_020--Hb_105602_010 Hb_004079_080 Hb_004079_080 Hb_000621_020--Hb_004079_080 Hb_000621_020--Hb_000103_270 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9416 7.87817 3.16552 7.11919 4.0224 6.87231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.81493 11.2073 11.0922 17.6419 4.23039

CAGE analysis