Hb_001486_030

Information

Type -
Description -
Location Contig1486: 21740-26355
Sequence    

Annotation

kegg
ID rcu:RCOM_1121500
description hypothetical protein
nr
ID XP_002525422.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHF3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1121500 PE=4 SV=1
Gene Ontology
ID GO:0010181
description protein creg2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12217: 21778-26307
cDNA
(Sanger)
(ID:Location)		 038_J23.ab1: 21914-25203

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_028811_010 0.1107758921 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
3 Hb_001341_100 0.1124007805 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
4 Hb_004064_010 0.1186400801 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
5 Hb_109002_020 0.1315640994 - - PREDICTED: CTP synthase-like [Jatropha curcas]
6 Hb_119494_010 0.1323513735 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
7 Hb_003442_070 0.1324545374 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
8 Hb_108329_020 0.1333896669 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
9 Hb_001623_160 0.1345994378 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
10 Hb_008147_070 0.1387356021 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
11 Hb_003038_140 0.1424156519 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
12 Hb_003266_100 0.1437823562 - - Isomerase protein [Gossypium arboreum]
13 Hb_002291_010 0.1465896314 - - ring finger protein, putative [Ricinus communis]
14 Hb_001214_090 0.1466088119 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
15 Hb_005285_030 0.1482043342 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
16 Hb_105602_010 0.148281118 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
17 Hb_004631_210 0.1507232104 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
18 Hb_073171_100 0.1599431989 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
19 Hb_001726_110 0.1605591145 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
20 Hb_000071_070 0.161411655 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]

Gene co-expression network

sample Hb_001486_030 Hb_001486_030 Hb_028811_010 Hb_028811_010 Hb_001486_030--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_001486_030--Hb_001341_100 Hb_004064_010 Hb_004064_010 Hb_001486_030--Hb_004064_010 Hb_109002_020 Hb_109002_020 Hb_001486_030--Hb_109002_020 Hb_119494_010 Hb_119494_010 Hb_001486_030--Hb_119494_010 Hb_003442_070 Hb_003442_070 Hb_001486_030--Hb_003442_070 Hb_001623_160 Hb_001623_160 Hb_028811_010--Hb_001623_160 Hb_001214_090 Hb_001214_090 Hb_028811_010--Hb_001214_090 Hb_000414_110 Hb_000414_110 Hb_028811_010--Hb_000414_110 Hb_011909_010 Hb_011909_010 Hb_028811_010--Hb_011909_010 Hb_028811_010--Hb_004064_010 Hb_004631_210 Hb_004631_210 Hb_001341_100--Hb_004631_210 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001341_100--Hb_003442_070 Hb_001341_100--Hb_004064_010 Hb_000465_300 Hb_000465_300 Hb_001341_100--Hb_000465_300 Hb_003266_100 Hb_003266_100 Hb_004064_010--Hb_003266_100 Hb_105602_010 Hb_105602_010 Hb_004064_010--Hb_105602_010 Hb_000621_020 Hb_000621_020 Hb_004064_010--Hb_000621_020 Hb_004064_010--Hb_109002_020 Hb_000175_540 Hb_000175_540 Hb_109002_020--Hb_000175_540 Hb_000504_070 Hb_000504_070 Hb_109002_020--Hb_000504_070 Hb_000103_270 Hb_000103_270 Hb_109002_020--Hb_000103_270 Hb_109002_020--Hb_000621_020 Hb_109002_020--Hb_003266_100 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_002005_100 Hb_002005_100 Hb_119494_010--Hb_002005_100 Hb_002400_410 Hb_002400_410 Hb_119494_010--Hb_002400_410 Hb_008147_070 Hb_008147_070 Hb_119494_010--Hb_008147_070 Hb_014894_010 Hb_014894_010 Hb_119494_010--Hb_014894_010 Hb_119494_010--Hb_001214_090 Hb_007850_080 Hb_007850_080 Hb_003442_070--Hb_007850_080 Hb_005285_030 Hb_005285_030 Hb_003442_070--Hb_005285_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.05061 14.5954 5.57018 6.6552 2.27724 5.42068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1348 11.917 13.8271 28.2282 6.66709

CAGE analysis