Hb_003442_070

Information

Type -
Description -
Location Contig3442: 64210-100828
Sequence    

Annotation

kegg
ID fve:101313198
description uncharacterized protein LOC101313198
nr
ID XP_012091451.1
description PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
swissprot
ID O81905
description Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1
trembl
ID A0A067JAQ7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21323 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus-specific glycoprotein s6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35945: 64823-65106 , PASA_asmbl_35946: 65292-65540 , PASA_asmbl_35947: 68126-69517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003442_070 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
2 Hb_007850_080 0.102974709 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
3 Hb_005285_030 0.1057753187 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
4 Hb_001341_100 0.1144055277 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
5 Hb_001486_030 0.1324545374 - - conserved hypothetical protein [Ricinus communis]
6 Hb_165669_010 0.1340904061 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
7 Hb_008173_110 0.1354739943 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000041_240 0.1359688315 - - glutaredoxin [Hevea brasiliensis]
9 Hb_004453_080 0.1369385106 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
10 Hb_003994_260 0.1403639317 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
11 Hb_008226_080 0.1424690802 - - Protein LRP16, putative [Ricinus communis]
12 Hb_002636_080 0.1426148446 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
13 Hb_000465_230 0.1447374918 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
14 Hb_034688_020 0.1455938346 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
15 Hb_001049_020 0.1459317726 - - conserved hypothetical protein [Ricinus communis]
16 Hb_034406_030 0.1465711865 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
17 Hb_002835_180 0.1493303664 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_002577_010 0.1498100522 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
19 Hb_010174_060 0.1503396246 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
20 Hb_074783_010 0.1509742282 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]

Gene co-expression network

sample Hb_003442_070 Hb_003442_070 Hb_007850_080 Hb_007850_080 Hb_003442_070--Hb_007850_080 Hb_005285_030 Hb_005285_030 Hb_003442_070--Hb_005285_030 Hb_001341_100 Hb_001341_100 Hb_003442_070--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_003442_070--Hb_001486_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_005656_100 Hb_005656_100 Hb_007850_080--Hb_005656_100 Hb_033642_080 Hb_033642_080 Hb_007850_080--Hb_033642_080 Hb_008226_080 Hb_008226_080 Hb_007850_080--Hb_008226_080 Hb_004453_080 Hb_004453_080 Hb_007850_080--Hb_004453_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180 Hb_000665_050 Hb_000665_050 Hb_005285_030--Hb_000665_050 Hb_003462_120 Hb_003462_120 Hb_005285_030--Hb_003462_120 Hb_002849_200 Hb_002849_200 Hb_005285_030--Hb_002849_200 Hb_003266_100 Hb_003266_100 Hb_005285_030--Hb_003266_100 Hb_028487_170 Hb_028487_170 Hb_005285_030--Hb_028487_170 Hb_004631_210 Hb_004631_210 Hb_001341_100--Hb_004631_210 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001341_100--Hb_001486_030 Hb_004064_010 Hb_004064_010 Hb_001341_100--Hb_004064_010 Hb_000465_300 Hb_000465_300 Hb_001341_100--Hb_000465_300 Hb_028811_010 Hb_028811_010 Hb_001486_030--Hb_028811_010 Hb_001486_030--Hb_004064_010 Hb_109002_020 Hb_109002_020 Hb_001486_030--Hb_109002_020 Hb_119494_010 Hb_119494_010 Hb_001486_030--Hb_119494_010 Hb_009510_040 Hb_009510_040 Hb_165669_010--Hb_009510_040 Hb_000329_250 Hb_000329_250 Hb_165669_010--Hb_000329_250 Hb_000496_120 Hb_000496_120 Hb_165669_010--Hb_000496_120 Hb_000215_060 Hb_000215_060 Hb_165669_010--Hb_000215_060 Hb_165669_010--Hb_008173_110 Hb_008771_030 Hb_008771_030 Hb_165669_010--Hb_008771_030 Hb_001653_020 Hb_001653_020 Hb_008173_110--Hb_001653_020 Hb_003994_260 Hb_003994_260 Hb_008173_110--Hb_003994_260 Hb_004453_050 Hb_004453_050 Hb_008173_110--Hb_004453_050 Hb_000069_420 Hb_000069_420 Hb_008173_110--Hb_000069_420 Hb_000210_120 Hb_000210_120 Hb_008173_110--Hb_000210_120 Hb_029584_050 Hb_029584_050 Hb_008173_110--Hb_029584_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29199 2.62597 0.988202 1.39655 0.426963 0.65579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.64945 3.30151 3.12095 3.7987 1.21356

CAGE analysis