Hb_009510_040

Information

Type -
Description -
Location Contig9510: 37364-41460
Sequence    

Annotation

kegg
ID rcu:RCOM_1398820
description tRNA-splicing endonuclease subunit Sen2-2, putative (EC:3.1.27.9)
nr
ID XP_012080034.1
description PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LSS3
description tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana GN=SEN2 PE=2 SV=1
trembl
ID A0A067K4C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11452 PE=4 SV=1
Gene Ontology
ID GO:0000213
description trna-splicing endonuclease subunit sen2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009510_040 0.0 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
2 Hb_165669_010 0.1107068957 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
3 Hb_000243_140 0.138310012 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
4 Hb_000503_050 0.1417580053 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
5 Hb_000003_050 0.1462213477 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
6 Hb_002577_010 0.1500745414 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
7 Hb_000419_060 0.1541666238 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
8 Hb_001969_090 0.1547773502 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
9 Hb_001481_120 0.1630936617 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
10 Hb_001021_130 0.1634577465 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
11 Hb_001619_080 0.1643259732 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001338_040 0.1661687474 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_010883_090 0.167459266 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
14 Hb_008771_030 0.1676127665 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
15 Hb_000270_440 0.1682957141 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
16 Hb_002216_040 0.1684679933 - - PREDICTED: protein PRD1 [Jatropha curcas]
17 Hb_001117_070 0.1693798947 - - 30S ribosomal protein S19, putative [Ricinus communis]
18 Hb_001277_320 0.1701832349 - - Stem-specific protein TSJT1, putative [Ricinus communis]
19 Hb_003994_060 0.1713555082 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
20 Hb_000703_250 0.1729011237 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_009510_040 Hb_009510_040 Hb_165669_010 Hb_165669_010 Hb_009510_040--Hb_165669_010 Hb_000243_140 Hb_000243_140 Hb_009510_040--Hb_000243_140 Hb_000503_050 Hb_000503_050 Hb_009510_040--Hb_000503_050 Hb_000003_050 Hb_000003_050 Hb_009510_040--Hb_000003_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_000329_250 Hb_000329_250 Hb_165669_010--Hb_000329_250 Hb_000496_120 Hb_000496_120 Hb_165669_010--Hb_000496_120 Hb_000215_060 Hb_000215_060 Hb_165669_010--Hb_000215_060 Hb_008173_110 Hb_008173_110 Hb_165669_010--Hb_008173_110 Hb_008771_030 Hb_008771_030 Hb_165669_010--Hb_008771_030 Hb_001117_070 Hb_001117_070 Hb_000243_140--Hb_001117_070 Hb_000640_300 Hb_000640_300 Hb_000243_140--Hb_000640_300 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_005333_150 Hb_005333_150 Hb_000243_140--Hb_005333_150 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220 Hb_002216_040 Hb_002216_040 Hb_000503_050--Hb_002216_040 Hb_005699_070 Hb_005699_070 Hb_000503_050--Hb_005699_070 Hb_014720_080 Hb_014720_080 Hb_000503_050--Hb_014720_080 Hb_000193_290 Hb_000193_290 Hb_000503_050--Hb_000193_290 Hb_002056_060 Hb_002056_060 Hb_000503_050--Hb_002056_060 Hb_000834_270 Hb_000834_270 Hb_000503_050--Hb_000834_270 Hb_000723_160 Hb_000723_160 Hb_000003_050--Hb_000723_160 Hb_001969_090 Hb_001969_090 Hb_000003_050--Hb_001969_090 Hb_000317_280 Hb_000317_280 Hb_000003_050--Hb_000317_280 Hb_000406_120 Hb_000406_120 Hb_000003_050--Hb_000406_120 Hb_000003_050--Hb_000503_050 Hb_074783_010 Hb_074783_010 Hb_002577_010--Hb_074783_010 Hb_004328_040 Hb_004328_040 Hb_002577_010--Hb_004328_040 Hb_003647_060 Hb_003647_060 Hb_002577_010--Hb_003647_060 Hb_000007_140 Hb_000007_140 Hb_002577_010--Hb_000007_140 Hb_004200_020 Hb_004200_020 Hb_002577_010--Hb_004200_020 Hb_002577_010--Hb_165669_010 Hb_000419_060--Hb_001969_090 Hb_001021_130 Hb_001021_130 Hb_000419_060--Hb_001021_130 Hb_010174_060 Hb_010174_060 Hb_000419_060--Hb_010174_060 Hb_012114_040 Hb_012114_040 Hb_000419_060--Hb_012114_040 Hb_000196_080 Hb_000196_080 Hb_000419_060--Hb_000196_080 Hb_004705_120 Hb_004705_120 Hb_000419_060--Hb_004705_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.918295 0.855705 0.0683194 0.369653 0.200662 0.40024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00397 1.26308 1.04779 1.00098 0.10571

CAGE analysis