Hb_000007_140

Information

Type -
Description -
Location Contig7: 142168-152297
Sequence    

Annotation

kegg
ID rcu:RCOM_1464810
description ubiquitin-protein ligase, putative
nr
ID XP_012080507.1
description PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
swissprot
ID Q9FZ70
description F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1
trembl
ID A0A067KGQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11826 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54737: 144360-144706 , PASA_asmbl_54738: 144744-145137 , PASA_asmbl_54739: 150363-150587 , PASA_asmbl_54741: 151736-151855 , PASA_asmbl_54742: 151880-152009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_140 0.0 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
2 Hb_000392_310 0.0770999391 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001504_330 0.0820456436 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
4 Hb_013399_050 0.0929609674 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
5 Hb_000603_080 0.0932107351 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
6 Hb_009803_050 0.0932493704 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
7 Hb_005356_040 0.0970409052 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_000748_130 0.1047008851 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
9 Hb_000367_260 0.1047452057 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
10 Hb_065525_090 0.1101525929 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
11 Hb_003994_260 0.1129188338 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
12 Hb_000424_200 0.1135788567 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
13 Hb_020805_130 0.1152188818 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_011021_040 0.1154030872 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
15 Hb_002878_020 0.1155685733 - - mitochondrial carrier protein, putative [Ricinus communis]
16 Hb_001959_190 0.1156879925 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
17 Hb_003783_030 0.1161117053 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
18 Hb_012760_070 0.1167165559 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_002016_080 0.1186067596 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
20 Hb_000147_040 0.1186556502 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_140 Hb_000007_140 Hb_000392_310 Hb_000392_310 Hb_000007_140--Hb_000392_310 Hb_001504_330 Hb_001504_330 Hb_000007_140--Hb_001504_330 Hb_013399_050 Hb_013399_050 Hb_000007_140--Hb_013399_050 Hb_000603_080 Hb_000603_080 Hb_000007_140--Hb_000603_080 Hb_009803_050 Hb_009803_050 Hb_000007_140--Hb_009803_050 Hb_005356_040 Hb_005356_040 Hb_000007_140--Hb_005356_040 Hb_010407_180 Hb_010407_180 Hb_000392_310--Hb_010407_180 Hb_000748_130 Hb_000748_130 Hb_000392_310--Hb_000748_130 Hb_000392_310--Hb_013399_050 Hb_001314_020 Hb_001314_020 Hb_000392_310--Hb_001314_020 Hb_000392_310--Hb_001504_330 Hb_001504_330--Hb_000603_080 Hb_002799_040 Hb_002799_040 Hb_001504_330--Hb_002799_040 Hb_031910_020 Hb_031910_020 Hb_001504_330--Hb_031910_020 Hb_000367_260 Hb_000367_260 Hb_001504_330--Hb_000367_260 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040 Hb_011021_040 Hb_011021_040 Hb_013399_050--Hb_011021_040 Hb_000424_200 Hb_000424_200 Hb_013399_050--Hb_000424_200 Hb_007037_020 Hb_007037_020 Hb_013399_050--Hb_007037_020 Hb_013405_140 Hb_013405_140 Hb_013399_050--Hb_013405_140 Hb_000327_060 Hb_000327_060 Hb_013399_050--Hb_000327_060 Hb_158445_010 Hb_158445_010 Hb_013399_050--Hb_158445_010 Hb_000603_080--Hb_009803_050 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_020805_130 Hb_020805_130 Hb_009803_050--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_009803_050--Hb_001959_190 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_009803_050--Hb_005488_200 Hb_000465_270 Hb_000465_270 Hb_005356_040--Hb_000465_270 Hb_000928_110 Hb_000928_110 Hb_005356_040--Hb_000928_110 Hb_000110_140 Hb_000110_140 Hb_005356_040--Hb_000110_140 Hb_004800_100 Hb_004800_100 Hb_005356_040--Hb_004800_100 Hb_005356_040--Hb_001504_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.641408 1.15004 0.460465 0.99358 0.347514 0.359168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07655 1.91929 2.12158 0.930057 0.816754

CAGE analysis