Hb_000392_310

Information

Type -
Description -
Location Contig392: 263040-264599
Sequence    

Annotation

kegg
ID rcu:RCOM_1514730
description hypothetical protein
nr
ID XP_002511553.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L736
description F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2
trembl
ID B9R978
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1514730 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at1g74510-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39273: 262796-265430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000007_140 0.0770999391 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
3 Hb_010407_180 0.1107426484 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
4 Hb_000748_130 0.1213764136 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
5 Hb_013399_050 0.1216942404 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
6 Hb_001314_020 0.1224111544 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
7 Hb_001504_330 0.1242139346 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
8 Hb_065525_090 0.127621621 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
9 Hb_005356_040 0.1311314763 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_001856_200 0.1311492868 - - Esterase PIR7B, putative [Ricinus communis]
11 Hb_000117_090 0.1315726269 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
12 Hb_020805_130 0.1323255628 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_001959_190 0.1323968536 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
14 Hb_000120_960 0.1326670457 - - isocitrate dehydrogenase, putative [Ricinus communis]
15 Hb_004607_030 0.1344175822 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
16 Hb_002660_070 0.135380044 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
17 Hb_002027_040 0.1358960515 - - synapse-associated protein, putative [Ricinus communis]
18 Hb_000592_020 0.1360122852 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
19 Hb_012760_070 0.1371693626 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_011030_020 0.1376269384 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_310 Hb_000392_310 Hb_000007_140 Hb_000007_140 Hb_000392_310--Hb_000007_140 Hb_010407_180 Hb_010407_180 Hb_000392_310--Hb_010407_180 Hb_000748_130 Hb_000748_130 Hb_000392_310--Hb_000748_130 Hb_013399_050 Hb_013399_050 Hb_000392_310--Hb_013399_050 Hb_001314_020 Hb_001314_020 Hb_000392_310--Hb_001314_020 Hb_001504_330 Hb_001504_330 Hb_000392_310--Hb_001504_330 Hb_000007_140--Hb_001504_330 Hb_000007_140--Hb_013399_050 Hb_000603_080 Hb_000603_080 Hb_000007_140--Hb_000603_080 Hb_009803_050 Hb_009803_050 Hb_000007_140--Hb_009803_050 Hb_005356_040 Hb_005356_040 Hb_000007_140--Hb_005356_040 Hb_000120_960 Hb_000120_960 Hb_010407_180--Hb_000120_960 Hb_001279_340 Hb_001279_340 Hb_010407_180--Hb_001279_340 Hb_000125_030 Hb_000125_030 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_002284_200 Hb_002284_200 Hb_000748_130--Hb_002284_200 Hb_012760_070 Hb_012760_070 Hb_000748_130--Hb_012760_070 Hb_148113_010 Hb_148113_010 Hb_000748_130--Hb_148113_010 Hb_010608_050 Hb_010608_050 Hb_000748_130--Hb_010608_050 Hb_001959_190 Hb_001959_190 Hb_000748_130--Hb_001959_190 Hb_004607_030 Hb_004607_030 Hb_000748_130--Hb_004607_030 Hb_011021_040 Hb_011021_040 Hb_013399_050--Hb_011021_040 Hb_000424_200 Hb_000424_200 Hb_013399_050--Hb_000424_200 Hb_007037_020 Hb_007037_020 Hb_013399_050--Hb_007037_020 Hb_013405_140 Hb_013405_140 Hb_013399_050--Hb_013405_140 Hb_000327_060 Hb_000327_060 Hb_013399_050--Hb_000327_060 Hb_158445_010 Hb_158445_010 Hb_013399_050--Hb_158445_010 Hb_002045_180 Hb_002045_180 Hb_001314_020--Hb_002045_180 Hb_001314_020--Hb_004607_030 Hb_000789_220 Hb_000789_220 Hb_001314_020--Hb_000789_220 Hb_025557_030 Hb_025557_030 Hb_001314_020--Hb_025557_030 Hb_011030_020 Hb_011030_020 Hb_001314_020--Hb_011030_020 Hb_000406_120 Hb_000406_120 Hb_001314_020--Hb_000406_120 Hb_001504_330--Hb_000603_080 Hb_002799_040 Hb_002799_040 Hb_001504_330--Hb_002799_040 Hb_031910_020 Hb_031910_020 Hb_001504_330--Hb_031910_020 Hb_000367_260 Hb_000367_260 Hb_001504_330--Hb_000367_260 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2033 16.9739 7.14935 13.6954 7.67128 3.40658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8824 27.6214 39.0669 11.0383 8.80968

CAGE analysis