Hb_002045_180

Information

Type -
Description -
Location Contig2045: 142762-145431
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23830g
description POPTRDRAFT_559623; hypothetical protein
nr
ID XP_012092135.1
description PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JF34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21854 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21044: 142802-145431 , PASA_asmbl_21045: 143606-143838
cDNA
(Sanger)
(ID:Location)		 002_B01.ab1: 144735-145330

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_180 0.0 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
2 Hb_001314_020 0.0979982596 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
3 Hb_000406_120 0.1036430588 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
4 Hb_000592_020 0.1187878064 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
5 Hb_000141_020 0.124532148 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
6 Hb_007429_030 0.1281261771 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
7 Hb_002110_020 0.1312923693 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
8 Hb_000125_030 0.1328396911 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
9 Hb_000789_220 0.1353759749 - - phosphofructokinase [Hevea brasiliensis]
10 Hb_006647_020 0.1374519698 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
11 Hb_003787_020 0.1387569403 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
12 Hb_003582_040 0.1391879077 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
13 Hb_005569_020 0.1413215807 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001159_080 0.1425278799 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
15 Hb_004414_050 0.1458676015 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000574_350 0.14854722 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
17 Hb_011030_020 0.1528193365 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
18 Hb_010407_180 0.1530953547 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
19 Hb_025214_130 0.1538194171 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
20 Hb_004410_100 0.1541999648 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]

Gene co-expression network

sample Hb_002045_180 Hb_002045_180 Hb_001314_020 Hb_001314_020 Hb_002045_180--Hb_001314_020 Hb_000406_120 Hb_000406_120 Hb_002045_180--Hb_000406_120 Hb_000592_020 Hb_000592_020 Hb_002045_180--Hb_000592_020 Hb_000141_020 Hb_000141_020 Hb_002045_180--Hb_000141_020 Hb_007429_030 Hb_007429_030 Hb_002045_180--Hb_007429_030 Hb_002110_020 Hb_002110_020 Hb_002045_180--Hb_002110_020 Hb_004607_030 Hb_004607_030 Hb_001314_020--Hb_004607_030 Hb_000789_220 Hb_000789_220 Hb_001314_020--Hb_000789_220 Hb_025557_030 Hb_025557_030 Hb_001314_020--Hb_025557_030 Hb_011030_020 Hb_011030_020 Hb_001314_020--Hb_011030_020 Hb_001314_020--Hb_000406_120 Hb_000125_030 Hb_000125_030 Hb_000406_120--Hb_000125_030 Hb_000406_120--Hb_000141_020 Hb_006647_020 Hb_006647_020 Hb_000406_120--Hb_006647_020 Hb_010407_180 Hb_010407_180 Hb_000406_120--Hb_010407_180 Hb_002056_060 Hb_002056_060 Hb_000406_120--Hb_002056_060 Hb_020805_130 Hb_020805_130 Hb_000592_020--Hb_020805_130 Hb_002027_040 Hb_002027_040 Hb_000592_020--Hb_002027_040 Hb_000567_120 Hb_000567_120 Hb_000592_020--Hb_000567_120 Hb_000592_020--Hb_004607_030 Hb_000120_960 Hb_000120_960 Hb_000592_020--Hb_000120_960 Hb_000108_070 Hb_000108_070 Hb_000592_020--Hb_000108_070 Hb_003504_020 Hb_003504_020 Hb_000141_020--Hb_003504_020 Hb_000141_020--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_001159_080 Hb_001159_080 Hb_000141_020--Hb_001159_080 Hb_003943_030 Hb_003943_030 Hb_007429_030--Hb_003943_030 Hb_007429_030--Hb_003504_020 Hb_025214_130 Hb_025214_130 Hb_007429_030--Hb_025214_130 Hb_004414_050 Hb_004414_050 Hb_007429_030--Hb_004414_050 Hb_019654_090 Hb_019654_090 Hb_007429_030--Hb_019654_090 Hb_001959_160 Hb_001959_160 Hb_007429_030--Hb_001959_160 Hb_004586_210 Hb_004586_210 Hb_002110_020--Hb_004586_210 Hb_002110_020--Hb_001314_020 Hb_000116_010 Hb_000116_010 Hb_002110_020--Hb_000116_010 Hb_004410_100 Hb_004410_100 Hb_002110_020--Hb_004410_100 Hb_004785_140 Hb_004785_140 Hb_002110_020--Hb_004785_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.531 107.832 29.3726 58.8878 31.8333 70.1614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
174.08 122.913 324.001 40.2829 32.2408

CAGE analysis