Hb_002110_020

Information

Type -
Description -
Location Contig2110: 13960-17736
Sequence    

Annotation

kegg
ID rcu:RCOM_1039060
description transcription factor, putative
nr
ID XP_012067965.1
description PREDICTED: transcription factor bHLH145 [Jatropha curcas]
swissprot
ID Q9FGB0
description Transcription factor bHLH145 OS=Arabidopsis thaliana GN=BHLH145 PE=2 SV=1
trembl
ID A0A067KZ24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15863 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh145

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21844: 13920-17752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_020 0.0 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
2 Hb_004586_210 0.1169938542 - - transcription factor, putative [Ricinus communis]
3 Hb_002045_180 0.1312923693 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
4 Hb_001314_020 0.1361338853 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
5 Hb_000116_010 0.1382914809 - - isocitrate dehydrogenase, putative [Ricinus communis]
6 Hb_004410_100 0.1446000753 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
7 Hb_004785_140 0.1454740541 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
8 Hb_004128_180 0.1525715397 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000592_020 0.1566305544 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
10 Hb_005542_060 0.15849199 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_005686_030 0.1586862255 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
12 Hb_027393_030 0.1589621586 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
13 Hb_000307_030 0.1591656078 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
14 Hb_025557_030 0.1614065582 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
15 Hb_027472_170 0.1628066527 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
16 Hb_000406_120 0.1630172198 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
17 Hb_006647_020 0.1643285824 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
18 Hb_119600_040 0.1670922483 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
19 Hb_000327_220 0.1684243176 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
20 Hb_011030_020 0.1685441379 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_020 Hb_002110_020 Hb_004586_210 Hb_004586_210 Hb_002110_020--Hb_004586_210 Hb_002045_180 Hb_002045_180 Hb_002110_020--Hb_002045_180 Hb_001314_020 Hb_001314_020 Hb_002110_020--Hb_001314_020 Hb_000116_010 Hb_000116_010 Hb_002110_020--Hb_000116_010 Hb_004410_100 Hb_004410_100 Hb_002110_020--Hb_004410_100 Hb_004785_140 Hb_004785_140 Hb_002110_020--Hb_004785_140 Hb_031862_130 Hb_031862_130 Hb_004586_210--Hb_031862_130 Hb_027393_030 Hb_027393_030 Hb_004586_210--Hb_027393_030 Hb_004586_210--Hb_000116_010 Hb_000007_180 Hb_000007_180 Hb_004586_210--Hb_000007_180 Hb_004204_170 Hb_004204_170 Hb_004586_210--Hb_004204_170 Hb_002045_180--Hb_001314_020 Hb_000406_120 Hb_000406_120 Hb_002045_180--Hb_000406_120 Hb_000592_020 Hb_000592_020 Hb_002045_180--Hb_000592_020 Hb_000141_020 Hb_000141_020 Hb_002045_180--Hb_000141_020 Hb_007429_030 Hb_007429_030 Hb_002045_180--Hb_007429_030 Hb_004607_030 Hb_004607_030 Hb_001314_020--Hb_004607_030 Hb_000789_220 Hb_000789_220 Hb_001314_020--Hb_000789_220 Hb_025557_030 Hb_025557_030 Hb_001314_020--Hb_025557_030 Hb_011030_020 Hb_011030_020 Hb_001314_020--Hb_011030_020 Hb_001314_020--Hb_000406_120 Hb_006647_020 Hb_006647_020 Hb_000116_010--Hb_006647_020 Hb_003976_030 Hb_003976_030 Hb_000116_010--Hb_003976_030 Hb_000063_140 Hb_000063_140 Hb_000116_010--Hb_000063_140 Hb_001617_050 Hb_001617_050 Hb_000116_010--Hb_001617_050 Hb_001892_020 Hb_001892_020 Hb_000116_010--Hb_001892_020 Hb_000116_010--Hb_004204_170 Hb_000236_140 Hb_000236_140 Hb_004410_100--Hb_000236_140 Hb_004128_180 Hb_004128_180 Hb_004410_100--Hb_004128_180 Hb_119600_040 Hb_119600_040 Hb_004410_100--Hb_119600_040 Hb_004414_050 Hb_004414_050 Hb_004410_100--Hb_004414_050 Hb_004410_100--Hb_006647_020 Hb_003551_050 Hb_003551_050 Hb_004410_100--Hb_003551_050 Hb_002205_190 Hb_002205_190 Hb_004785_140--Hb_002205_190 Hb_005542_060 Hb_005542_060 Hb_004785_140--Hb_005542_060 Hb_004785_140--Hb_011030_020 Hb_001493_180 Hb_001493_180 Hb_004785_140--Hb_001493_180 Hb_004785_140--Hb_000236_140 Hb_000445_040 Hb_000445_040 Hb_004785_140--Hb_000445_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.5962 76.1901 27.5301 47.1675 30.1207 38.2419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.1945 64.1073 243.432 33.9983 12.259

CAGE analysis