Hb_000789_220

Information

Type -
Description -
Location Contig789: 171239-176157
Sequence    

Annotation

kegg
ID rcu:RCOM_1048820
description phosphofructokinase, putative (EC:2.7.1.11)
nr
ID AIE47275.1
description phosphofructokinase [Hevea brasiliensis]
swissprot
ID Q94AA4
description ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1
trembl
ID A0A068LQG6
description ATP-dependent 6-phosphofructokinase OS=Hevea brasiliensis GN=PFK6 PE=2 SV=1
Gene Ontology
ID GO:0003872
description atp-dependent 6-phosphofructokinase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58225: 171237-171537 , PASA_asmbl_58226: 171914-172103 , PASA_asmbl_58227: 175280-176411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_220 0.0 - - phosphofructokinase [Hevea brasiliensis]
2 Hb_004705_120 0.1012917299 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001314_020 0.10339505 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
4 Hb_010174_060 0.1096343019 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
5 Hb_056753_010 0.1113187058 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_003687_240 0.1147345367 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
7 Hb_008616_070 0.1168591744 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
8 Hb_000327_220 0.1179374193 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
9 Hb_000592_020 0.118675883 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
10 Hb_001507_040 0.1216067083 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011030_020 0.123277985 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
12 Hb_000406_120 0.126883337 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
13 Hb_000317_280 0.1278754337 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
14 Hb_001969_090 0.1291751202 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
15 Hb_011953_020 0.1302360521 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
16 Hb_001811_030 0.13057587 - - Beta-ureidopropionase, putative [Ricinus communis]
17 Hb_004607_030 0.1310877322 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
18 Hb_000340_390 0.131419206 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
19 Hb_002660_070 0.1318816183 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
20 Hb_012114_040 0.1322708528 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000789_220 Hb_000789_220 Hb_004705_120 Hb_004705_120 Hb_000789_220--Hb_004705_120 Hb_001314_020 Hb_001314_020 Hb_000789_220--Hb_001314_020 Hb_010174_060 Hb_010174_060 Hb_000789_220--Hb_010174_060 Hb_056753_010 Hb_056753_010 Hb_000789_220--Hb_056753_010 Hb_003687_240 Hb_003687_240 Hb_000789_220--Hb_003687_240 Hb_008616_070 Hb_008616_070 Hb_000789_220--Hb_008616_070 Hb_001519_050 Hb_001519_050 Hb_004705_120--Hb_001519_050 Hb_000125_190 Hb_000125_190 Hb_004705_120--Hb_000125_190 Hb_004705_120--Hb_008616_070 Hb_000373_130 Hb_000373_130 Hb_004705_120--Hb_000373_130 Hb_015778_010 Hb_015778_010 Hb_004705_120--Hb_015778_010 Hb_001080_280 Hb_001080_280 Hb_004705_120--Hb_001080_280 Hb_002045_180 Hb_002045_180 Hb_001314_020--Hb_002045_180 Hb_004607_030 Hb_004607_030 Hb_001314_020--Hb_004607_030 Hb_025557_030 Hb_025557_030 Hb_001314_020--Hb_025557_030 Hb_011030_020 Hb_011030_020 Hb_001314_020--Hb_011030_020 Hb_000406_120 Hb_000406_120 Hb_001314_020--Hb_000406_120 Hb_001021_130 Hb_001021_130 Hb_010174_060--Hb_001021_130 Hb_000069_600 Hb_000069_600 Hb_010174_060--Hb_000069_600 Hb_006615_020 Hb_006615_020 Hb_010174_060--Hb_006615_020 Hb_000010_460 Hb_000010_460 Hb_010174_060--Hb_000010_460 Hb_034406_030 Hb_034406_030 Hb_010174_060--Hb_034406_030 Hb_004679_050 Hb_004679_050 Hb_056753_010--Hb_004679_050 Hb_001507_040 Hb_001507_040 Hb_056753_010--Hb_001507_040 Hb_002411_050 Hb_002411_050 Hb_056753_010--Hb_002411_050 Hb_002799_040 Hb_002799_040 Hb_056753_010--Hb_002799_040 Hb_000731_260 Hb_000731_260 Hb_056753_010--Hb_000731_260 Hb_010883_090 Hb_010883_090 Hb_003687_240--Hb_010883_090 Hb_002631_060 Hb_002631_060 Hb_003687_240--Hb_002631_060 Hb_000805_020 Hb_000805_020 Hb_003687_240--Hb_000805_020 Hb_007747_200 Hb_007747_200 Hb_003687_240--Hb_007747_200 Hb_000696_040 Hb_000696_040 Hb_003687_240--Hb_000696_040 Hb_021596_040 Hb_021596_040 Hb_003687_240--Hb_021596_040 Hb_008616_070--Hb_001507_040 Hb_002660_070 Hb_002660_070 Hb_008616_070--Hb_002660_070 Hb_020805_130 Hb_020805_130 Hb_008616_070--Hb_020805_130 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_008616_070--Hb_015778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.97612 13.4272 4.99863 7.91068 8.21752 9.82885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1691 16.3588 41.7186 15.5197 6.617

CAGE analysis