Hb_021596_040

Information

Type -
Description -
Location Contig21596: 28880-31161
Sequence    

Annotation

kegg
ID rcu:RCOM_0679340
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002516850.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SJK9
description Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1
trembl
ID B9RSY1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0679340 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021596_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001699_130 0.0846304483 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
3 Hb_011214_020 0.0910020016 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
4 Hb_000367_060 0.0946277709 - - diacylglycerol kinase, theta, putative [Ricinus communis]
5 Hb_003687_240 0.097320228 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
6 Hb_012114_040 0.1044096479 - - DNA binding protein, putative [Ricinus communis]
7 Hb_007441_230 0.1060326861 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
8 Hb_010608_050 0.1070073504 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
9 Hb_000058_060 0.1086895586 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
10 Hb_000696_040 0.1104672497 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_005568_120 0.1114894297 - - Prephenate dehydratase [Hevea brasiliensis]
12 Hb_002631_060 0.1116937238 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
13 Hb_000723_080 0.1134600246 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
14 Hb_007416_320 0.1135831252 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007747_200 0.1151702197 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
16 Hb_000340_390 0.1151951198 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
17 Hb_000805_020 0.11536402 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
18 Hb_010883_090 0.1163041158 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
19 Hb_000009_460 0.1165225955 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001969_090 0.1166184513 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]

Gene co-expression network

sample Hb_021596_040 Hb_021596_040 Hb_001699_130 Hb_001699_130 Hb_021596_040--Hb_001699_130 Hb_011214_020 Hb_011214_020 Hb_021596_040--Hb_011214_020 Hb_000367_060 Hb_000367_060 Hb_021596_040--Hb_000367_060 Hb_003687_240 Hb_003687_240 Hb_021596_040--Hb_003687_240 Hb_012114_040 Hb_012114_040 Hb_021596_040--Hb_012114_040 Hb_007441_230 Hb_007441_230 Hb_021596_040--Hb_007441_230 Hb_000617_150 Hb_000617_150 Hb_001699_130--Hb_000617_150 Hb_000696_040 Hb_000696_040 Hb_001699_130--Hb_000696_040 Hb_000120_680 Hb_000120_680 Hb_001699_130--Hb_000120_680 Hb_000723_080 Hb_000723_080 Hb_001699_130--Hb_000723_080 Hb_010608_050 Hb_010608_050 Hb_001699_130--Hb_010608_050 Hb_016901_010 Hb_016901_010 Hb_001699_130--Hb_016901_010 Hb_000732_130 Hb_000732_130 Hb_011214_020--Hb_000732_130 Hb_007416_320 Hb_007416_320 Hb_011214_020--Hb_007416_320 Hb_002878_020 Hb_002878_020 Hb_011214_020--Hb_002878_020 Hb_001545_170 Hb_001545_170 Hb_011214_020--Hb_001545_170 Hb_011173_050 Hb_011173_050 Hb_011214_020--Hb_011173_050 Hb_005463_040 Hb_005463_040 Hb_011214_020--Hb_005463_040 Hb_000367_060--Hb_000696_040 Hb_000367_060--Hb_001699_130 Hb_002435_120 Hb_002435_120 Hb_000367_060--Hb_002435_120 Hb_000340_390 Hb_000340_390 Hb_000367_060--Hb_000340_390 Hb_001959_190 Hb_001959_190 Hb_000367_060--Hb_001959_190 Hb_010883_090 Hb_010883_090 Hb_003687_240--Hb_010883_090 Hb_002631_060 Hb_002631_060 Hb_003687_240--Hb_002631_060 Hb_000805_020 Hb_000805_020 Hb_003687_240--Hb_000805_020 Hb_007747_200 Hb_007747_200 Hb_003687_240--Hb_007747_200 Hb_003687_240--Hb_000696_040 Hb_001663_050 Hb_001663_050 Hb_012114_040--Hb_001663_050 Hb_005568_120 Hb_005568_120 Hb_012114_040--Hb_005568_120 Hb_155764_010 Hb_155764_010 Hb_012114_040--Hb_155764_010 Hb_032208_060 Hb_032208_060 Hb_012114_040--Hb_032208_060 Hb_001519_050 Hb_001519_050 Hb_012114_040--Hb_001519_050 Hb_002061_040 Hb_002061_040 Hb_012114_040--Hb_002061_040 Hb_002137_020 Hb_002137_020 Hb_007441_230--Hb_002137_020 Hb_007441_230--Hb_000805_020 Hb_004223_280 Hb_004223_280 Hb_007441_230--Hb_004223_280 Hb_005305_080 Hb_005305_080 Hb_007441_230--Hb_005305_080 Hb_007441_200 Hb_007441_200 Hb_007441_230--Hb_007441_200 Hb_000571_120 Hb_000571_120 Hb_007441_230--Hb_000571_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.539712 0.921109 0.136828 0.704002 0.81479 1.19111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33623 2.05242 1.97384 1.17918 0.523275

CAGE analysis