Hb_010883_090

Information

Type -
Description -
Location Contig10883: 84083-90060
Sequence    

Annotation

kegg
ID rcu:RCOM_1032370
description dual specificity protein kinase-ttk, putative (EC:2.7.12.2)
nr
ID XP_012078169.1
description PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
swissprot
ID Q54UL8
description Probable serine/threonine-protein kinase mps1 OS=Dictyostelium discoideum GN=mps1 PE=3 SV=1
trembl
ID A0A067KLU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12051 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase mps1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02662: 84205-90010 , PASA_asmbl_02663: 88182-89704 , PASA_asmbl_02664: 84756-87628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_090 0.0 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
2 Hb_002631_060 0.0639310144 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
3 Hb_003994_060 0.0750315134 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
4 Hb_000805_020 0.0767769041 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
5 Hb_003687_240 0.082049264 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
6 Hb_001892_020 0.0860215631 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_004907_110 0.0863294126 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
8 Hb_007416_320 0.0879093832 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006114_010 0.0951735549 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
10 Hb_001123_320 0.0958884341 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
11 Hb_000189_560 0.0979631239 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
12 Hb_000230_390 0.0980034282 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
13 Hb_000840_250 0.0982269609 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
14 Hb_000260_270 0.0985238205 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000185_030 0.0988436268 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
16 Hb_001633_210 0.1009304338 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
17 Hb_003376_350 0.1015781282 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
18 Hb_000696_040 0.1019722294 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_004453_050 0.1026248506 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
20 Hb_000866_170 0.1044583814 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010883_090 Hb_010883_090 Hb_002631_060 Hb_002631_060 Hb_010883_090--Hb_002631_060 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_000805_020 Hb_000805_020 Hb_010883_090--Hb_000805_020 Hb_003687_240 Hb_003687_240 Hb_010883_090--Hb_003687_240 Hb_001892_020 Hb_001892_020 Hb_010883_090--Hb_001892_020 Hb_004907_110 Hb_004907_110 Hb_010883_090--Hb_004907_110 Hb_002631_060--Hb_004907_110 Hb_003376_350 Hb_003376_350 Hb_002631_060--Hb_003376_350 Hb_007416_320 Hb_007416_320 Hb_002631_060--Hb_007416_320 Hb_000260_270 Hb_000260_270 Hb_002631_060--Hb_000260_270 Hb_000395_190 Hb_000395_190 Hb_002631_060--Hb_000395_190 Hb_000189_560 Hb_000189_560 Hb_003994_060--Hb_000189_560 Hb_000185_030 Hb_000185_030 Hb_003994_060--Hb_000185_030 Hb_001021_080 Hb_001021_080 Hb_003994_060--Hb_001021_080 Hb_008770_030 Hb_008770_030 Hb_003994_060--Hb_008770_030 Hb_004705_140 Hb_004705_140 Hb_003994_060--Hb_004705_140 Hb_000805_020--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_000805_020--Hb_007416_320 Hb_007441_200 Hb_007441_200 Hb_000805_020--Hb_007441_200 Hb_003687_240--Hb_002631_060 Hb_003687_240--Hb_000805_020 Hb_007747_200 Hb_007747_200 Hb_003687_240--Hb_007747_200 Hb_000696_040 Hb_000696_040 Hb_003687_240--Hb_000696_040 Hb_021596_040 Hb_021596_040 Hb_003687_240--Hb_021596_040 Hb_001892_020--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_001892_020--Hb_000280_080 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_001892_020--Hb_002631_060 Hb_001178_140 Hb_001178_140 Hb_001892_020--Hb_001178_140 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.49035 5.13024 1.70483 2.85777 3.23347 4.47339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.07915 6.15772 7.79808 5.73218 1.33814

CAGE analysis