Hb_003994_060

Information

Type -
Description -
Location Contig3994: 56384-68655
Sequence    

Annotation

kegg
ID mdm:103445098
description uncharacterized LOC103445098
nr
ID XP_012087274.1
description PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JM01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39726: 57678-67187 , PASA_asmbl_39727: 59538-59983 , PASA_asmbl_39729: 67600-68428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_060 0.0 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
2 Hb_010883_090 0.0750315134 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
3 Hb_000189_560 0.0945734158 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
4 Hb_000185_030 0.1001845382 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
5 Hb_001021_080 0.1009015733 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
6 Hb_008770_030 0.101464039 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
7 Hb_004705_140 0.1059013065 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
8 Hb_000230_390 0.1064907287 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
9 Hb_033772_030 0.1075691653 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
10 Hb_001123_320 0.109574314 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
11 Hb_000840_250 0.111453936 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
12 Hb_006788_020 0.1116815369 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
13 Hb_002900_090 0.1131398326 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
14 Hb_004453_050 0.1138302837 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
15 Hb_000710_060 0.1142440538 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
16 Hb_000556_160 0.1148103348 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
17 Hb_000866_170 0.114965419 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_009767_100 0.1157013754 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
19 Hb_001633_210 0.1165795128 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
20 Hb_002631_060 0.1169757855 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_060 Hb_003994_060 Hb_010883_090 Hb_010883_090 Hb_003994_060--Hb_010883_090 Hb_000189_560 Hb_000189_560 Hb_003994_060--Hb_000189_560 Hb_000185_030 Hb_000185_030 Hb_003994_060--Hb_000185_030 Hb_001021_080 Hb_001021_080 Hb_003994_060--Hb_001021_080 Hb_008770_030 Hb_008770_030 Hb_003994_060--Hb_008770_030 Hb_004705_140 Hb_004705_140 Hb_003994_060--Hb_004705_140 Hb_002631_060 Hb_002631_060 Hb_010883_090--Hb_002631_060 Hb_000805_020 Hb_000805_020 Hb_010883_090--Hb_000805_020 Hb_003687_240 Hb_003687_240 Hb_010883_090--Hb_003687_240 Hb_001892_020 Hb_001892_020 Hb_010883_090--Hb_001892_020 Hb_004907_110 Hb_004907_110 Hb_010883_090--Hb_004907_110 Hb_000866_220 Hb_000866_220 Hb_000189_560--Hb_000866_220 Hb_007532_030 Hb_007532_030 Hb_000189_560--Hb_007532_030 Hb_000189_560--Hb_000185_030 Hb_007508_090 Hb_007508_090 Hb_000189_560--Hb_007508_090 Hb_000710_060 Hb_000710_060 Hb_000189_560--Hb_000710_060 Hb_004355_020 Hb_004355_020 Hb_000189_560--Hb_004355_020 Hb_000297_010 Hb_000297_010 Hb_000185_030--Hb_000297_010 Hb_000185_030--Hb_000710_060 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_001633_210 Hb_001633_210 Hb_000185_030--Hb_001633_210 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_000840_250 Hb_000840_250 Hb_000185_030--Hb_000840_250 Hb_172632_110 Hb_172632_110 Hb_001021_080--Hb_172632_110 Hb_008147_070 Hb_008147_070 Hb_001021_080--Hb_008147_070 Hb_002391_210 Hb_002391_210 Hb_001021_080--Hb_002391_210 Hb_000739_100 Hb_000739_100 Hb_001021_080--Hb_000739_100 Hb_006831_040 Hb_006831_040 Hb_001021_080--Hb_006831_040 Hb_001157_090 Hb_001157_090 Hb_001021_080--Hb_001157_090 Hb_008770_030--Hb_000710_060 Hb_015807_150 Hb_015807_150 Hb_008770_030--Hb_015807_150 Hb_008770_030--Hb_000297_010 Hb_033772_030 Hb_033772_030 Hb_008770_030--Hb_033772_030 Hb_019863_070 Hb_019863_070 Hb_008770_030--Hb_019863_070 Hb_008770_030--Hb_000185_030 Hb_009701_010 Hb_009701_010 Hb_004705_140--Hb_009701_010 Hb_003609_020 Hb_003609_020 Hb_004705_140--Hb_003609_020 Hb_073562_010 Hb_073562_010 Hb_004705_140--Hb_073562_010 Hb_002435_110 Hb_002435_110 Hb_004705_140--Hb_002435_110 Hb_003929_130 Hb_003929_130 Hb_004705_140--Hb_003929_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73888 16.8629 5.28745 6.3884 6.39799 8.95846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5891 14.4964 16.0384 16.2398 3.89068

CAGE analysis