Hb_003609_020

Information

Type desease resistance
Description Gene Name: Clusterin
Location Contig3609: 25747-28620
Sequence    

Annotation

kegg
ID cic:CICLE_v10007376mg
description hypothetical protein
nr
ID KDO52926.1
description hypothetical protein CISIN_1g001897mg [Citrus sinensis]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID A0A067EPS2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001897mg PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance protein at4g27190-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37178: 25619-25856 , PASA_asmbl_37179: 26634-26785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003609_020 0.0 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
2 Hb_004705_140 0.1217654144 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
3 Hb_000045_150 0.1345923695 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
4 Hb_003994_060 0.1551205648 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
5 Hb_073562_010 0.16379084 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
6 Hb_024468_020 0.1668320582 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_001969_090 0.1675246546 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
8 Hb_009701_010 0.1682006159 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
9 Hb_168697_010 0.172279976 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
10 Hb_043485_010 0.1752716484 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
11 Hb_010883_090 0.1784001037 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
12 Hb_000680_050 0.1795181512 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
13 Hb_000575_150 0.181199829 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
14 Hb_011311_020 0.1821257927 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
15 Hb_002496_040 0.183291626 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
16 Hb_010874_020 0.1844060425 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
17 Hb_002007_240 0.1844941892 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
18 Hb_003020_050 0.185181229 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_080952_010 0.1864715165 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
20 Hb_022250_090 0.1866916833 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]

Gene co-expression network

sample Hb_003609_020 Hb_003609_020 Hb_004705_140 Hb_004705_140 Hb_003609_020--Hb_004705_140 Hb_000045_150 Hb_000045_150 Hb_003609_020--Hb_000045_150 Hb_003994_060 Hb_003994_060 Hb_003609_020--Hb_003994_060 Hb_073562_010 Hb_073562_010 Hb_003609_020--Hb_073562_010 Hb_024468_020 Hb_024468_020 Hb_003609_020--Hb_024468_020 Hb_001969_090 Hb_001969_090 Hb_003609_020--Hb_001969_090 Hb_009701_010 Hb_009701_010 Hb_004705_140--Hb_009701_010 Hb_004705_140--Hb_003994_060 Hb_004705_140--Hb_073562_010 Hb_002435_110 Hb_002435_110 Hb_004705_140--Hb_002435_110 Hb_003929_130 Hb_003929_130 Hb_004705_140--Hb_003929_130 Hb_000045_150--Hb_004705_140 Hb_008103_120 Hb_008103_120 Hb_000045_150--Hb_008103_120 Hb_000045_150--Hb_073562_010 Hb_004452_010 Hb_004452_010 Hb_000045_150--Hb_004452_010 Hb_001266_060 Hb_001266_060 Hb_000045_150--Hb_001266_060 Hb_010883_090 Hb_010883_090 Hb_003994_060--Hb_010883_090 Hb_000189_560 Hb_000189_560 Hb_003994_060--Hb_000189_560 Hb_000185_030 Hb_000185_030 Hb_003994_060--Hb_000185_030 Hb_001021_080 Hb_001021_080 Hb_003994_060--Hb_001021_080 Hb_008770_030 Hb_008770_030 Hb_003994_060--Hb_008770_030 Hb_000330_040 Hb_000330_040 Hb_073562_010--Hb_000330_040 Hb_003020_050 Hb_003020_050 Hb_073562_010--Hb_003020_050 Hb_002110_030 Hb_002110_030 Hb_073562_010--Hb_002110_030 Hb_008775_040 Hb_008775_040 Hb_073562_010--Hb_008775_040 Hb_001019_180 Hb_001019_180 Hb_073562_010--Hb_001019_180 Hb_002701_040 Hb_002701_040 Hb_073562_010--Hb_002701_040 Hb_003777_050 Hb_003777_050 Hb_024468_020--Hb_003777_050 Hb_005224_010 Hb_005224_010 Hb_024468_020--Hb_005224_010 Hb_000016_190 Hb_000016_190 Hb_024468_020--Hb_000016_190 Hb_003972_080 Hb_003972_080 Hb_024468_020--Hb_003972_080 Hb_000110_320 Hb_000110_320 Hb_024468_020--Hb_000110_320 Hb_007747_200 Hb_007747_200 Hb_001969_090--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_001969_090--Hb_000317_280 Hb_000575_150 Hb_000575_150 Hb_001969_090--Hb_000575_150 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_001969_090--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_001969_090--Hb_000805_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.700891 2.41016 0.354641 0.238707 0.651442 1.21264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.881595 1.1363 2.7436 2.42961 0.356987

CAGE analysis