Hb_003972_080

Information

Type -
Description -
Location Contig3972: 144331-148892
Sequence    

Annotation

kegg
ID rcu:RCOM_1620240
description 6-phosphogluconolactonase, putative (EC:3.1.1.31)
nr
ID XP_012067807.1
description PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
swissprot
ID Q9LMX8
description Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1
trembl
ID A0A067L287
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15730 PE=4 SV=1
Gene Ontology
ID GO:0016853
description probable 6-phosphogluconolactonase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39627: 144138-149119 , PASA_asmbl_39628: 149182-149340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003972_080 0.0 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
2 Hb_003462_120 0.1191619725 - - Acidic endochitinase [Theobroma cacao]
3 Hb_001481_140 0.1279716801 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
4 Hb_003783_030 0.1305472763 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
5 Hb_000007_140 0.1323995633 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
6 Hb_005224_010 0.1356201263 - - glycine-rich protein [Bruguiera gymnorhiza]
7 Hb_036790_020 0.1371201456 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
8 Hb_165669_010 0.1424916774 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
9 Hb_000110_320 0.1425951338 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
10 Hb_008226_080 0.1426461834 - - Protein LRP16, putative [Ricinus communis]
11 Hb_000392_310 0.1428320986 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000731_260 0.1434064451 - - hypothetical protein RCOM_0905090 [Ricinus communis]
13 Hb_032208_060 0.143795036 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
14 Hb_002374_400 0.1438073118 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
15 Hb_005285_030 0.1447274606 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
16 Hb_001504_330 0.1457858874 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
17 Hb_004705_120 0.1466695454 - - ATP binding protein, putative [Ricinus communis]
18 Hb_012114_040 0.1480247022 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000599_350 0.1482293895 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
20 Hb_000340_320 0.1494805299 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]

Gene co-expression network

sample Hb_003972_080 Hb_003972_080 Hb_003462_120 Hb_003462_120 Hb_003972_080--Hb_003462_120 Hb_001481_140 Hb_001481_140 Hb_003972_080--Hb_001481_140 Hb_003783_030 Hb_003783_030 Hb_003972_080--Hb_003783_030 Hb_000007_140 Hb_000007_140 Hb_003972_080--Hb_000007_140 Hb_005224_010 Hb_005224_010 Hb_003972_080--Hb_005224_010 Hb_036790_020 Hb_036790_020 Hb_003972_080--Hb_036790_020 Hb_003462_120--Hb_001481_140 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_004672_010 Hb_004672_010 Hb_003462_120--Hb_004672_010 Hb_000175_030 Hb_000175_030 Hb_003462_120--Hb_000175_030 Hb_000934_190 Hb_000934_190 Hb_003462_120--Hb_000934_190 Hb_003462_120--Hb_003783_030 Hb_001519_030 Hb_001519_030 Hb_001481_140--Hb_001519_030 Hb_001005_080 Hb_001005_080 Hb_001481_140--Hb_001005_080 Hb_000417_260 Hb_000417_260 Hb_001481_140--Hb_000417_260 Hb_001481_140--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_001481_140--Hb_001008_090 Hb_013405_140 Hb_013405_140 Hb_003783_030--Hb_013405_140 Hb_002016_080 Hb_002016_080 Hb_003783_030--Hb_002016_080 Hb_007037_020 Hb_007037_020 Hb_003783_030--Hb_007037_020 Hb_000673_020 Hb_000673_020 Hb_003783_030--Hb_000673_020 Hb_003783_030--Hb_001481_140 Hb_000392_310 Hb_000392_310 Hb_000007_140--Hb_000392_310 Hb_001504_330 Hb_001504_330 Hb_000007_140--Hb_001504_330 Hb_013399_050 Hb_013399_050 Hb_000007_140--Hb_013399_050 Hb_000603_080 Hb_000603_080 Hb_000007_140--Hb_000603_080 Hb_009803_050 Hb_009803_050 Hb_000007_140--Hb_009803_050 Hb_005356_040 Hb_005356_040 Hb_000007_140--Hb_005356_040 Hb_000327_220 Hb_000327_220 Hb_005224_010--Hb_000327_220 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_189216_030 Hb_189216_030 Hb_036790_020--Hb_189216_030 Hb_001638_230 Hb_001638_230 Hb_036790_020--Hb_001638_230 Hb_036790_020--Hb_003462_120 Hb_002217_230 Hb_002217_230 Hb_036790_020--Hb_002217_230 Hb_005285_030 Hb_005285_030 Hb_036790_020--Hb_005285_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86823 11.0071 5.12644 11.0404 1.84348 5.16274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8506 22.5381 30.7429 15.3111 3.42614

CAGE analysis