Hb_002239_060

Information

Type -
Description -
Location Contig2239: 70694-73778
Sequence    

Annotation

kegg
ID vvi:100253554
description general transcription factor IIH subunit 2
nr
ID XP_012064858.1
description PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
swissprot
ID Q2TBV5
description General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2 PE=2 SV=1
trembl
ID A0A097PR13
description GTF2H2 (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0000439
description general transcription factor iih subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23282: 70706-73793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002239_060 0.0 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
2 Hb_001481_140 0.0917378311 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
3 Hb_002742_090 0.1058912381 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
4 Hb_093458_050 0.108975116 - - glutathione reductase [Hevea brasiliensis]
5 Hb_003581_260 0.1100637134 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
6 Hb_001008_090 0.110411447 - - cytochrome C oxidase, putative [Ricinus communis]
7 Hb_000530_070 0.1114422698 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
8 Hb_032208_060 0.1139799074 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
9 Hb_092107_010 0.1154625146 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005224_010 0.1190776891 - - glycine-rich protein [Bruguiera gymnorhiza]
11 Hb_000111_450 0.1212995852 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
12 Hb_000922_390 0.1216715149 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
13 Hb_003783_030 0.1216839089 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
14 Hb_003994_190 0.1217991616 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001159_080 0.123082711 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
16 Hb_000817_030 0.1231223362 - - mak, putative [Ricinus communis]
17 Hb_001519_030 0.1233574961 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
18 Hb_011953_020 0.1234132822 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
19 Hb_004056_030 0.1252039493 - - hypothetical protein 33 [Hevea brasiliensis]
20 Hb_006569_100 0.1256550454 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]

Gene co-expression network

sample Hb_002239_060 Hb_002239_060 Hb_001481_140 Hb_001481_140 Hb_002239_060--Hb_001481_140 Hb_002742_090 Hb_002742_090 Hb_002239_060--Hb_002742_090 Hb_093458_050 Hb_093458_050 Hb_002239_060--Hb_093458_050 Hb_003581_260 Hb_003581_260 Hb_002239_060--Hb_003581_260 Hb_001008_090 Hb_001008_090 Hb_002239_060--Hb_001008_090 Hb_000530_070 Hb_000530_070 Hb_002239_060--Hb_000530_070 Hb_001519_030 Hb_001519_030 Hb_001481_140--Hb_001519_030 Hb_001005_080 Hb_001005_080 Hb_001481_140--Hb_001005_080 Hb_000417_260 Hb_000417_260 Hb_001481_140--Hb_000417_260 Hb_003462_120 Hb_003462_120 Hb_001481_140--Hb_003462_120 Hb_004672_010 Hb_004672_010 Hb_001481_140--Hb_004672_010 Hb_001481_140--Hb_001008_090 Hb_000817_030 Hb_000817_030 Hb_002742_090--Hb_000817_030 Hb_001776_160 Hb_001776_160 Hb_002742_090--Hb_001776_160 Hb_000120_020 Hb_000120_020 Hb_002742_090--Hb_000120_020 Hb_028515_010 Hb_028515_010 Hb_002742_090--Hb_028515_010 Hb_002110_200 Hb_002110_200 Hb_002742_090--Hb_002110_200 Hb_068056_030 Hb_068056_030 Hb_002742_090--Hb_068056_030 Hb_011953_020 Hb_011953_020 Hb_093458_050--Hb_011953_020 Hb_003551_050 Hb_003551_050 Hb_093458_050--Hb_003551_050 Hb_000922_390 Hb_000922_390 Hb_093458_050--Hb_000922_390 Hb_002600_040 Hb_002600_040 Hb_093458_050--Hb_002600_040 Hb_093458_050--Hb_001519_030 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_001159_080 Hb_001159_080 Hb_003581_260--Hb_001159_080 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_003581_260--Hb_001135_210 Hb_005278_040 Hb_005278_040 Hb_001008_090--Hb_005278_040 Hb_001008_090--Hb_000417_260 Hb_004659_060 Hb_004659_060 Hb_001008_090--Hb_004659_060 Hb_006569_100 Hb_006569_100 Hb_001008_090--Hb_006569_100 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010 Hb_001314_040 Hb_001314_040 Hb_000530_070--Hb_001314_040 Hb_001157_010 Hb_001157_010 Hb_000530_070--Hb_001157_010 Hb_003581_220 Hb_003581_220 Hb_000530_070--Hb_003581_220 Hb_000802_100 Hb_000802_100 Hb_000530_070--Hb_000802_100 Hb_002026_120 Hb_002026_120 Hb_000530_070--Hb_002026_120 Hb_001076_020 Hb_001076_020 Hb_000530_070--Hb_001076_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.05421 3.99662 6.03486 11.7677 7.19573 9.84715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1779 36.1867 48.4431 17.8098 9.58408

CAGE analysis