Hb_002600_040

Information

Type -
Description -
Location Contig2600: 46847-48438
Sequence    

Annotation

kegg
ID rcu:RCOM_0597000
description cytochrome B561, putative
nr
ID XP_012077929.1
description PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
swissprot
ID Q9SWS1
description Probable transmembrane ascorbate ferrireductase 2 OS=Arabidopsis thaliana GN=CYB561B PE=1 SV=1
trembl
ID A0A067K9L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12957 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable transmembrane ascorbate ferrireductase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27084: 46890-47229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_040 0.0 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
2 Hb_093458_050 0.0989836199 - - glutathione reductase [Hevea brasiliensis]
3 Hb_000922_390 0.1037323967 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
4 Hb_012291_030 0.105659339 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
5 Hb_002660_070 0.108749438 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
6 Hb_001519_030 0.1141050899 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
7 Hb_011953_020 0.118478475 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
8 Hb_008616_070 0.118545393 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
9 Hb_009113_070 0.1221681596 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
10 Hb_001663_050 0.1222342589 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
11 Hb_001507_040 0.1262328732 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000934_190 0.1262870183 - - SER/ARG-rich protein 34A [Theobroma cacao]
13 Hb_181600_010 0.1268286212 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
14 Hb_065525_090 0.1268748593 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
15 Hb_001481_140 0.1269881402 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
16 Hb_012114_040 0.1273444476 - - DNA binding protein, putative [Ricinus communis]
17 Hb_003462_120 0.127601438 - - Acidic endochitinase [Theobroma cacao]
18 Hb_001811_030 0.1279758564 - - Beta-ureidopropionase, putative [Ricinus communis]
19 Hb_000673_020 0.1287686857 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
20 Hb_000841_020 0.1297441615 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]

Gene co-expression network

sample Hb_002600_040 Hb_002600_040 Hb_093458_050 Hb_093458_050 Hb_002600_040--Hb_093458_050 Hb_000922_390 Hb_000922_390 Hb_002600_040--Hb_000922_390 Hb_012291_030 Hb_012291_030 Hb_002600_040--Hb_012291_030 Hb_002660_070 Hb_002660_070 Hb_002600_040--Hb_002660_070 Hb_001519_030 Hb_001519_030 Hb_002600_040--Hb_001519_030 Hb_011953_020 Hb_011953_020 Hb_002600_040--Hb_011953_020 Hb_093458_050--Hb_011953_020 Hb_003551_050 Hb_003551_050 Hb_093458_050--Hb_003551_050 Hb_093458_050--Hb_000922_390 Hb_093458_050--Hb_001519_030 Hb_002239_060 Hb_002239_060 Hb_093458_050--Hb_002239_060 Hb_011671_450 Hb_011671_450 Hb_000922_390--Hb_011671_450 Hb_001811_030 Hb_001811_030 Hb_000922_390--Hb_001811_030 Hb_009193_030 Hb_009193_030 Hb_000922_390--Hb_009193_030 Hb_000820_090 Hb_000820_090 Hb_000922_390--Hb_000820_090 Hb_021443_080 Hb_021443_080 Hb_012291_030--Hb_021443_080 Hb_000622_090 Hb_000622_090 Hb_012291_030--Hb_000622_090 Hb_012291_030--Hb_093458_050 Hb_003783_030 Hb_003783_030 Hb_012291_030--Hb_003783_030 Hb_000108_190 Hb_000108_190 Hb_012291_030--Hb_000108_190 Hb_000120_960 Hb_000120_960 Hb_002660_070--Hb_000120_960 Hb_008616_070 Hb_008616_070 Hb_002660_070--Hb_008616_070 Hb_001507_040 Hb_001507_040 Hb_002660_070--Hb_001507_040 Hb_000086_280 Hb_000086_280 Hb_002660_070--Hb_000086_280 Hb_065525_090 Hb_065525_090 Hb_002660_070--Hb_065525_090 Hb_020805_130 Hb_020805_130 Hb_002660_070--Hb_020805_130 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_002005_020 Hb_002005_020 Hb_011953_020--Hb_002005_020 Hb_029866_020 Hb_029866_020 Hb_011953_020--Hb_029866_020 Hb_011953_020--Hb_003551_050 Hb_001519_050 Hb_001519_050 Hb_011953_020--Hb_001519_050 Hb_011953_020--Hb_001519_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.36455 2.47232 2.83632 5.3256 4.59748 2.28431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0607 11.5374 16.7548 10.2583 5.10821

CAGE analysis