Hb_012291_030

Information

Type transcription factor
Description TF Family: G2-like
Location Contig12291: 21336-26469
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02010g
description myb family transcription factor family protein
nr
ID XP_011018496.1
description PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
swissprot
ID Q9C616
description Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1
trembl
ID U5GMY7
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0001s02010g PE=4 SV=1
Gene Ontology
ID GO:0009791
description probable transcription factor kan2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06945: 22264-24029 , PASA_asmbl_06946: 25150-25926 , PASA_asmbl_06948: 26231-26707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012291_030 0.0 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
2 Hb_002600_040 0.105659339 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
3 Hb_021443_080 0.1133510336 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
4 Hb_000622_090 0.1197680814 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
5 Hb_093458_050 0.1218230013 - - glutathione reductase [Hevea brasiliensis]
6 Hb_003783_030 0.1228605599 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
7 Hb_000108_190 0.1260512221 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
8 Hb_002239_060 0.126763648 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
9 Hb_009113_070 0.1277152712 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
10 Hb_000563_250 0.1304332858 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
11 Hb_002660_070 0.1328251138 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
12 Hb_011953_020 0.1331510867 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
13 Hb_006065_010 0.1354560411 - - PREDICTED: uncharacterized protein LOC105639733 [Jatropha curcas]
14 Hb_000003_270 0.1364107591 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
15 Hb_000175_060 0.1377556245 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
16 Hb_000617_150 0.1384596802 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
17 Hb_004126_070 0.1400942583 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
18 Hb_000424_210 0.1403897652 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
19 Hb_001481_140 0.1403998971 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
20 Hb_003581_260 0.1405674038 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]

Gene co-expression network

sample Hb_012291_030 Hb_012291_030 Hb_002600_040 Hb_002600_040 Hb_012291_030--Hb_002600_040 Hb_021443_080 Hb_021443_080 Hb_012291_030--Hb_021443_080 Hb_000622_090 Hb_000622_090 Hb_012291_030--Hb_000622_090 Hb_093458_050 Hb_093458_050 Hb_012291_030--Hb_093458_050 Hb_003783_030 Hb_003783_030 Hb_012291_030--Hb_003783_030 Hb_000108_190 Hb_000108_190 Hb_012291_030--Hb_000108_190 Hb_002600_040--Hb_093458_050 Hb_000922_390 Hb_000922_390 Hb_002600_040--Hb_000922_390 Hb_002660_070 Hb_002660_070 Hb_002600_040--Hb_002660_070 Hb_001519_030 Hb_001519_030 Hb_002600_040--Hb_001519_030 Hb_011953_020 Hb_011953_020 Hb_002600_040--Hb_011953_020 Hb_001153_020 Hb_001153_020 Hb_021443_080--Hb_001153_020 Hb_001775_110 Hb_001775_110 Hb_021443_080--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_021443_080--Hb_000398_040 Hb_001314_040 Hb_001314_040 Hb_021443_080--Hb_001314_040 Hb_168905_010 Hb_168905_010 Hb_021443_080--Hb_168905_010 Hb_000120_680 Hb_000120_680 Hb_000622_090--Hb_000120_680 Hb_000240_090 Hb_000240_090 Hb_000622_090--Hb_000240_090 Hb_021409_160 Hb_021409_160 Hb_000622_090--Hb_021409_160 Hb_004994_100 Hb_004994_100 Hb_000622_090--Hb_004994_100 Hb_000563_250 Hb_000563_250 Hb_000622_090--Hb_000563_250 Hb_004126_070 Hb_004126_070 Hb_000622_090--Hb_004126_070 Hb_093458_050--Hb_011953_020 Hb_003551_050 Hb_003551_050 Hb_093458_050--Hb_003551_050 Hb_093458_050--Hb_000922_390 Hb_093458_050--Hb_001519_030 Hb_002239_060 Hb_002239_060 Hb_093458_050--Hb_002239_060 Hb_013405_140 Hb_013405_140 Hb_003783_030--Hb_013405_140 Hb_002016_080 Hb_002016_080 Hb_003783_030--Hb_002016_080 Hb_007037_020 Hb_007037_020 Hb_003783_030--Hb_007037_020 Hb_000673_020 Hb_000673_020 Hb_003783_030--Hb_000673_020 Hb_001481_140 Hb_001481_140 Hb_003783_030--Hb_001481_140 Hb_003462_120 Hb_003462_120 Hb_003783_030--Hb_003462_120 Hb_000108_190--Hb_004126_070 Hb_000120_020 Hb_000120_020 Hb_000108_190--Hb_000120_020 Hb_000841_020 Hb_000841_020 Hb_000108_190--Hb_000841_020 Hb_028515_010 Hb_028515_010 Hb_000108_190--Hb_028515_010 Hb_000291_080 Hb_000291_080 Hb_000108_190--Hb_000291_080 Hb_002742_090 Hb_002742_090 Hb_000108_190--Hb_002742_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91345 2.90908 2.23669 3.74921 6.24612 1.7505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5264 13.7743 17.5606 7.30998 3.65648

CAGE analysis