Hb_000841_020

Information

Type -
Description -
Location Contig841: 23302-30610
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05350g
description POPTRDRAFT_823292; NADH2 dehydrogenase family protein
nr
ID XP_011005501.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
swissprot
ID Q94C12
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana GN=At3g18410 PE=2 SV=1
trembl
ID A9PC01
description NADH2 dehydrogenase family protein OS=Populus trichocarpa GN=POPTR_0012s05350g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60140: 23437-23985
cDNA
(Sanger)
(ID:Location)		 039_J23.ab1: 23437-23852

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000841_020 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
2 Hb_000398_040 0.0787296481 - - Auxin response factor, putative [Ricinus communis]
3 Hb_004126_070 0.0823615875 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
4 Hb_017225_020 0.0841998593 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
5 Hb_000108_190 0.0859645793 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
6 Hb_002111_040 0.0875810371 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
7 Hb_009113_070 0.0892733022 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
8 Hb_000291_080 0.0938136369 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
9 Hb_001775_110 0.096776601 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
10 Hb_000789_230 0.0991119271 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
11 Hb_034299_050 0.1008069995 - - hypothetical protein CICLE_v10031248mg [Citrus clementina]
12 Hb_000373_120 0.1047298318 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
13 Hb_002183_060 0.1048864164 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
14 Hb_008648_010 0.1050644123 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
15 Hb_006846_060 0.1062236271 - - inositol hexaphosphate kinase, putative [Ricinus communis]
16 Hb_001360_050 0.1068939502 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_027654_050 0.1081881254 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
18 Hb_005446_010 0.1096292462 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
19 Hb_000016_080 0.110039771 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
20 Hb_000059_370 0.1102781467 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]

Gene co-expression network

sample Hb_000841_020 Hb_000841_020 Hb_000398_040 Hb_000398_040 Hb_000841_020--Hb_000398_040 Hb_004126_070 Hb_004126_070 Hb_000841_020--Hb_004126_070 Hb_017225_020 Hb_017225_020 Hb_000841_020--Hb_017225_020 Hb_000108_190 Hb_000108_190 Hb_000841_020--Hb_000108_190 Hb_002111_040 Hb_002111_040 Hb_000841_020--Hb_002111_040 Hb_009113_070 Hb_009113_070 Hb_000841_020--Hb_009113_070 Hb_001775_110 Hb_001775_110 Hb_000398_040--Hb_001775_110 Hb_000398_040--Hb_009113_070 Hb_001083_020 Hb_001083_020 Hb_000398_040--Hb_001083_020 Hb_114336_020 Hb_114336_020 Hb_000398_040--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_000398_040--Hb_011534_030 Hb_004126_070--Hb_000108_190 Hb_001897_040 Hb_001897_040 Hb_004126_070--Hb_001897_040 Hb_000291_080 Hb_000291_080 Hb_004126_070--Hb_000291_080 Hb_032264_110 Hb_032264_110 Hb_004126_070--Hb_032264_110 Hb_001059_030 Hb_001059_030 Hb_004126_070--Hb_001059_030 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_027654_050 Hb_027654_050 Hb_017225_020--Hb_027654_050 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_017225_020--Hb_010361_010 Hb_028872_080 Hb_028872_080 Hb_017225_020--Hb_028872_080 Hb_000120_020 Hb_000120_020 Hb_000108_190--Hb_000120_020 Hb_028515_010 Hb_028515_010 Hb_000108_190--Hb_028515_010 Hb_000108_190--Hb_000291_080 Hb_002742_090 Hb_002742_090 Hb_000108_190--Hb_002742_090 Hb_002111_040--Hb_000291_080 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_031862_100 Hb_031862_100 Hb_002111_040--Hb_031862_100 Hb_001390_130 Hb_001390_130 Hb_002111_040--Hb_001390_130 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_172932_010 Hb_172932_010 Hb_009113_070--Hb_172932_010 Hb_009113_070--Hb_011534_030 Hb_000617_150 Hb_000617_150 Hb_009113_070--Hb_000617_150 Hb_000143_030 Hb_000143_030 Hb_009113_070--Hb_000143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3363 4.19986 9.59716 13.4825 20.2367 11.4953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5798 36.7697 30.3488 21 15.8511

CAGE analysis