Hb_001153_020

Information

Type -
Description -
Location Contig1153: 6498-8846
Sequence    

Annotation

kegg
ID cmo:103490959
description histone deacetylase complex subunit SAP18-like
nr
ID XP_008448944.1
description PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
swissprot
ID O64644
description Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1
trembl
ID A0A0A0L751
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038150 PE=4 SV=1
Gene Ontology
ID GO:0005730
description histone deacetylase complex subunit sap18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04593: 6615-7299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_020 0.0 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
2 Hb_021443_080 0.1161309661 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
3 Hb_000635_210 0.1267130295 - - unknown [Populus trichocarpa]
4 Hb_168905_010 0.1312115127 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
5 Hb_000200_290 0.1361829252 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
6 Hb_000997_360 0.1367122931 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
7 Hb_000125_210 0.1492812285 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
8 Hb_000083_090 0.1515926705 - - immunophilin, putative [Ricinus communis]
9 Hb_027380_180 0.1521495729 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
10 Hb_000084_320 0.1522661647 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
11 Hb_000836_130 0.1553000076 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
12 Hb_001240_020 0.1564703627 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
13 Hb_000096_150 0.1566799232 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
14 Hb_003086_060 0.1585023498 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
15 Hb_000928_130 0.1588248007 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_001348_120 0.1592457699 - - Phloem protein 2-B10, putative [Theobroma cacao]
17 Hb_002518_290 0.1594672191 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
18 Hb_000673_020 0.1639892052 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
19 Hb_012291_030 0.1651835854 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
20 Hb_005656_100 0.1659197092 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001153_020 Hb_001153_020 Hb_021443_080 Hb_021443_080 Hb_001153_020--Hb_021443_080 Hb_000635_210 Hb_000635_210 Hb_001153_020--Hb_000635_210 Hb_168905_010 Hb_168905_010 Hb_001153_020--Hb_168905_010 Hb_000200_290 Hb_000200_290 Hb_001153_020--Hb_000200_290 Hb_000997_360 Hb_000997_360 Hb_001153_020--Hb_000997_360 Hb_000125_210 Hb_000125_210 Hb_001153_020--Hb_000125_210 Hb_012291_030 Hb_012291_030 Hb_021443_080--Hb_012291_030 Hb_001775_110 Hb_001775_110 Hb_021443_080--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_021443_080--Hb_000398_040 Hb_001314_040 Hb_001314_040 Hb_021443_080--Hb_001314_040 Hb_021443_080--Hb_168905_010 Hb_001076_020 Hb_001076_020 Hb_000635_210--Hb_001076_020 Hb_000635_210--Hb_000997_360 Hb_000224_140 Hb_000224_140 Hb_000635_210--Hb_000224_140 Hb_000817_030 Hb_000817_030 Hb_000635_210--Hb_000817_030 Hb_002742_090 Hb_002742_090 Hb_000635_210--Hb_002742_090 Hb_000096_150 Hb_000096_150 Hb_000635_210--Hb_000096_150 Hb_001218_040 Hb_001218_040 Hb_168905_010--Hb_001218_040 Hb_011671_390 Hb_011671_390 Hb_168905_010--Hb_011671_390 Hb_168905_010--Hb_000997_360 Hb_001616_030 Hb_001616_030 Hb_168905_010--Hb_001616_030 Hb_000616_040 Hb_000616_040 Hb_000200_290--Hb_000616_040 Hb_000454_070 Hb_000454_070 Hb_000200_290--Hb_000454_070 Hb_181600_010 Hb_181600_010 Hb_000200_290--Hb_181600_010 Hb_002835_100 Hb_002835_100 Hb_000200_290--Hb_002835_100 Hb_000200_290--Hb_021443_080 Hb_000997_360--Hb_000125_210 Hb_000997_360--Hb_001218_040 Hb_000997_360--Hb_021443_080 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040 Hb_000673_020 Hb_000673_020 Hb_000125_210--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000125_210--Hb_161175_010 Hb_000125_210--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000175_030 Hb_000175_030 Hb_000125_210--Hb_000175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17516 2.321 3.42159 2.39038 5.06175 2.50671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0515 21.785 18.135 9.66765 10.4837

CAGE analysis