Hb_000200_290

Information

Type -
Description -
Location Contig200: 333613-341068
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12960g
description POPTRDRAFT_723690; hypothetical protein
nr
ID XP_012075722.1
description PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
swissprot
ID F4I1S7
description Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1 SV=1
trembl
ID A0A067KFK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09309 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20226: 333888-334076 , PASA_asmbl_20227: 339771-340677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_290 0.0 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
2 Hb_001153_020 0.1361829252 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
3 Hb_000616_040 0.139396357 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
4 Hb_000454_070 0.1428174516 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
5 Hb_181600_010 0.1431415626 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
6 Hb_002835_100 0.155406935 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
7 Hb_021443_080 0.1555830089 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
8 Hb_000116_430 0.1565313874 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
9 Hb_009113_070 0.1631329417 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
10 Hb_009838_010 0.1679976347 - - -
11 Hb_042202_030 0.168754354 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
12 Hb_003209_200 0.1697619517 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
13 Hb_002600_040 0.1711961206 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
14 Hb_000252_110 0.1722499743 - - -
15 Hb_027380_180 0.1722800325 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
16 Hb_000997_360 0.1753655638 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
17 Hb_048476_050 0.1757017236 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
18 Hb_000125_210 0.1776064894 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
19 Hb_001357_120 0.1780107046 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
20 Hb_001171_050 0.1782104796 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]

Gene co-expression network

sample Hb_000200_290 Hb_000200_290 Hb_001153_020 Hb_001153_020 Hb_000200_290--Hb_001153_020 Hb_000616_040 Hb_000616_040 Hb_000200_290--Hb_000616_040 Hb_000454_070 Hb_000454_070 Hb_000200_290--Hb_000454_070 Hb_181600_010 Hb_181600_010 Hb_000200_290--Hb_181600_010 Hb_002835_100 Hb_002835_100 Hb_000200_290--Hb_002835_100 Hb_021443_080 Hb_021443_080 Hb_000200_290--Hb_021443_080 Hb_001153_020--Hb_021443_080 Hb_000635_210 Hb_000635_210 Hb_001153_020--Hb_000635_210 Hb_168905_010 Hb_168905_010 Hb_001153_020--Hb_168905_010 Hb_000997_360 Hb_000997_360 Hb_001153_020--Hb_000997_360 Hb_000125_210 Hb_000125_210 Hb_001153_020--Hb_000125_210 Hb_010560_040 Hb_010560_040 Hb_000616_040--Hb_010560_040 Hb_009838_010 Hb_009838_010 Hb_000616_040--Hb_009838_010 Hb_000162_140 Hb_000162_140 Hb_000616_040--Hb_000162_140 Hb_000742_110 Hb_000742_110 Hb_000616_040--Hb_000742_110 Hb_003097_210 Hb_003097_210 Hb_000616_040--Hb_003097_210 Hb_000432_050 Hb_000432_050 Hb_000454_070--Hb_000432_050 Hb_048476_050 Hb_048476_050 Hb_000454_070--Hb_048476_050 Hb_005000_070 Hb_005000_070 Hb_000454_070--Hb_005000_070 Hb_001538_140 Hb_001538_140 Hb_000454_070--Hb_001538_140 Hb_000363_200 Hb_000363_200 Hb_000454_070--Hb_000363_200 Hb_181600_010--Hb_048476_050 Hb_181600_010--Hb_003097_210 Hb_001545_080 Hb_001545_080 Hb_181600_010--Hb_001545_080 Hb_001688_020 Hb_001688_020 Hb_181600_010--Hb_001688_020 Hb_155764_010 Hb_155764_010 Hb_181600_010--Hb_155764_010 Hb_000260_810 Hb_000260_810 Hb_181600_010--Hb_000260_810 Hb_002835_100--Hb_181600_010 Hb_012114_040 Hb_012114_040 Hb_002835_100--Hb_012114_040 Hb_001663_050 Hb_001663_050 Hb_002835_100--Hb_001663_050 Hb_032208_060 Hb_032208_060 Hb_002835_100--Hb_032208_060 Hb_001357_300 Hb_001357_300 Hb_002835_100--Hb_001357_300 Hb_001414_030 Hb_001414_030 Hb_002835_100--Hb_001414_030 Hb_012291_030 Hb_012291_030 Hb_021443_080--Hb_012291_030 Hb_001775_110 Hb_001775_110 Hb_021443_080--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_021443_080--Hb_000398_040 Hb_001314_040 Hb_001314_040 Hb_021443_080--Hb_001314_040 Hb_021443_080--Hb_168905_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0326946 0.0387631 0.0642314 0.0133319 0.0558426 0.0441681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.234836 0.184779 0.223275 0.200398 0.106654

CAGE analysis