Hb_009838_010

Information

Type -
Description -
Location Contig9838: 1085-2253
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_010 0.0 - - -
2 Hb_000616_040 0.1340421804 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_003209_200 0.1604512033 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
4 Hb_000200_290 0.1679976347 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
5 Hb_003861_120 0.1771844664 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
6 Hb_000162_140 0.177727594 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
7 Hb_000196_080 0.1781726552 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
8 Hb_002929_050 0.1800945125 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
9 Hb_000454_070 0.183491029 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
10 Hb_000853_410 0.1840500178 - - -
11 Hb_005839_110 0.1912164803 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
12 Hb_000483_250 0.195661168 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
13 Hb_001153_020 0.196077975 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
14 Hb_015690_020 0.196397817 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_005501_050 0.1979689415 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_003086_060 0.2005185061 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
17 Hb_000083_090 0.2008325407 - - immunophilin, putative [Ricinus communis]
18 Hb_021888_070 0.2022481526 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
19 Hb_003097_210 0.2039563029 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
20 Hb_000419_060 0.2044023599 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_009838_010 Hb_009838_010 Hb_000616_040 Hb_000616_040 Hb_009838_010--Hb_000616_040 Hb_003209_200 Hb_003209_200 Hb_009838_010--Hb_003209_200 Hb_000200_290 Hb_000200_290 Hb_009838_010--Hb_000200_290 Hb_003861_120 Hb_003861_120 Hb_009838_010--Hb_003861_120 Hb_000162_140 Hb_000162_140 Hb_009838_010--Hb_000162_140 Hb_000196_080 Hb_000196_080 Hb_009838_010--Hb_000196_080 Hb_010560_040 Hb_010560_040 Hb_000616_040--Hb_010560_040 Hb_000616_040--Hb_000162_140 Hb_000616_040--Hb_000200_290 Hb_000742_110 Hb_000742_110 Hb_000616_040--Hb_000742_110 Hb_003097_210 Hb_003097_210 Hb_000616_040--Hb_003097_210 Hb_000003_270 Hb_000003_270 Hb_003209_200--Hb_000003_270 Hb_003209_200--Hb_000196_080 Hb_000424_210 Hb_000424_210 Hb_003209_200--Hb_000424_210 Hb_002138_010 Hb_002138_010 Hb_003209_200--Hb_002138_010 Hb_010174_060 Hb_010174_060 Hb_003209_200--Hb_010174_060 Hb_012291_030 Hb_012291_030 Hb_003209_200--Hb_012291_030 Hb_001153_020 Hb_001153_020 Hb_000200_290--Hb_001153_020 Hb_000454_070 Hb_000454_070 Hb_000200_290--Hb_000454_070 Hb_181600_010 Hb_181600_010 Hb_000200_290--Hb_181600_010 Hb_002835_100 Hb_002835_100 Hb_000200_290--Hb_002835_100 Hb_021443_080 Hb_021443_080 Hb_000200_290--Hb_021443_080 Hb_002929_050 Hb_002929_050 Hb_003861_120--Hb_002929_050 Hb_010710_020 Hb_010710_020 Hb_003861_120--Hb_010710_020 Hb_001538_100 Hb_001538_100 Hb_003861_120--Hb_001538_100 Hb_003861_120--Hb_003097_210 Hb_000446_030 Hb_000446_030 Hb_003861_120--Hb_000446_030 Hb_005839_110 Hb_005839_110 Hb_000162_140--Hb_005839_110 Hb_003147_050 Hb_003147_050 Hb_000162_140--Hb_003147_050 Hb_002659_040 Hb_002659_040 Hb_000162_140--Hb_002659_040 Hb_001616_060 Hb_001616_060 Hb_000162_140--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_000162_140--Hb_003929_120 Hb_002078_460 Hb_002078_460 Hb_000162_140--Hb_002078_460 Hb_000196_080--Hb_000424_210 Hb_000125_030 Hb_000125_030 Hb_000196_080--Hb_000125_030 Hb_003504_020 Hb_003504_020 Hb_000196_080--Hb_003504_020 Hb_000196_080--Hb_000162_140 Hb_003581_260 Hb_003581_260 Hb_000196_080--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000196_080--Hb_007382_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0829756 0.155003 0.0315349 0 0.119667 0.0967495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.577224 0.453677 0.398609 0.27855 0.147079

CAGE analysis