Hb_002929_050

Information

Type -
Description -
Location Contig2929: 32353-37111
Sequence    

Annotation

kegg
ID rcu:RCOM_1487470
description polyadenylate-binding protein, putative
nr
ID XP_012069054.1
description PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
swissprot
ID O04319
description Polyadenylate-binding protein 6 OS=Arabidopsis thaliana GN=PAB6 PE=2 SV=1
trembl
ID B9RQB9
description Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_1487470 PE=4 SV=1
Gene Ontology
ID GO:0005737
description polyadenylate-binding protein 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30727: 33028-33270 , PASA_asmbl_30728: 33555-35075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002929_050 0.0 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
2 Hb_001538_100 0.1194626136 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
3 Hb_000446_030 0.1309755524 - - amino acid binding protein, putative [Ricinus communis]
4 Hb_174865_030 0.1319306587 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
5 Hb_002540_030 0.1351098737 - - hypothetical protein 32 [Hevea brasiliensis]
6 Hb_003861_120 0.1403707337 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
7 Hb_000483_250 0.1411261843 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
8 Hb_010710_020 0.1437732916 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
9 Hb_004109_020 0.1442898111 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
10 Hb_001329_210 0.1500477724 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_002471_160 0.1544109463 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
12 Hb_183086_040 0.1549172086 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
13 Hb_001047_150 0.1553807736 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
14 Hb_003893_090 0.156579328 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
15 Hb_000922_100 0.1569237578 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
16 Hb_000221_150 0.1569760333 - - -
17 Hb_000333_090 0.1573880906 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
18 Hb_002107_120 0.157509348 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
19 Hb_014720_080 0.1585254823 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
20 Hb_001300_270 0.1619476026 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]

Gene co-expression network

sample Hb_002929_050 Hb_002929_050 Hb_001538_100 Hb_001538_100 Hb_002929_050--Hb_001538_100 Hb_000446_030 Hb_000446_030 Hb_002929_050--Hb_000446_030 Hb_174865_030 Hb_174865_030 Hb_002929_050--Hb_174865_030 Hb_002540_030 Hb_002540_030 Hb_002929_050--Hb_002540_030 Hb_003861_120 Hb_003861_120 Hb_002929_050--Hb_003861_120 Hb_000483_250 Hb_000483_250 Hb_002929_050--Hb_000483_250 Hb_004109_020 Hb_004109_020 Hb_001538_100--Hb_004109_020 Hb_003376_130 Hb_003376_130 Hb_001538_100--Hb_003376_130 Hb_001538_100--Hb_002540_030 Hb_003086_100 Hb_003086_100 Hb_001538_100--Hb_003086_100 Hb_002107_120 Hb_002107_120 Hb_001538_100--Hb_002107_120 Hb_148930_010 Hb_148930_010 Hb_001538_100--Hb_148930_010 Hb_000025_120 Hb_000025_120 Hb_000446_030--Hb_000025_120 Hb_000987_120 Hb_000987_120 Hb_000446_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_000446_030--Hb_001722_100 Hb_000696_340 Hb_000696_340 Hb_000446_030--Hb_000696_340 Hb_000446_030--Hb_174865_030 Hb_000221_150 Hb_000221_150 Hb_000446_030--Hb_000221_150 Hb_174865_030--Hb_000987_120 Hb_174865_030--Hb_001722_100 Hb_174865_030--Hb_002540_030 Hb_001235_190 Hb_001235_190 Hb_174865_030--Hb_001235_190 Hb_000522_080 Hb_000522_080 Hb_174865_030--Hb_000522_080 Hb_014720_080 Hb_014720_080 Hb_002540_030--Hb_014720_080 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_010710_020 Hb_010710_020 Hb_003861_120--Hb_010710_020 Hb_009838_010 Hb_009838_010 Hb_003861_120--Hb_009838_010 Hb_003861_120--Hb_001538_100 Hb_003097_210 Hb_003097_210 Hb_003861_120--Hb_003097_210 Hb_003861_120--Hb_000446_030 Hb_005211_190 Hb_005211_190 Hb_000483_250--Hb_005211_190 Hb_000483_250--Hb_002107_120 Hb_060618_010 Hb_060618_010 Hb_000483_250--Hb_060618_010 Hb_000836_140 Hb_000836_140 Hb_000483_250--Hb_000836_140 Hb_001424_020 Hb_001424_020 Hb_000483_250--Hb_001424_020 Hb_000083_090 Hb_000083_090 Hb_000483_250--Hb_000083_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15704 8.57005 1.47354 1.63582 3.50857 7.91603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.5665 23.6407 12.8512 8.18785 2.02951

CAGE analysis