Hb_000987_120

Information

Type -
Description -
Location Contig987: 111017-117489
Sequence    

Annotation

kegg
ID rcu:RCOM_0848880
description hypothetical protein
nr
ID XP_012089754.1
description PREDICTED: protein SIEL [Jatropha curcas]
swissprot
ID Q8VZA0
description Protein SIEL OS=Arabidopsis thaliana GN=SIEL PE=1 SV=1
trembl
ID B9SL19
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0848880 PE=4 SV=1
Gene Ontology
ID GO:0005488
description arm repeat superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64666: 111025-111191 , PASA_asmbl_64667: 112936-114715 , PASA_asmbl_64669: 116164-116741 , PASA_asmbl_64670: 117028-117608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_120 0.0 - - PREDICTED: protein SIEL [Jatropha curcas]
2 Hb_174865_030 0.0849668135 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
3 Hb_000307_090 0.0970115445 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
4 Hb_001722_100 0.0979663511 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000522_080 0.0986334318 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
6 Hb_005736_060 0.0997148859 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
7 Hb_003185_080 0.1014772294 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
8 Hb_001235_190 0.1033197651 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
9 Hb_000446_030 0.103333934 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_004242_080 0.1058411807 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
11 Hb_000506_120 0.1081941936 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
12 Hb_007317_150 0.1097937164 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
13 Hb_000221_210 0.1133941811 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
14 Hb_034350_010 0.1134235348 - - PREDICTED: TMV resistance protein N-like isoform X2 [Populus euphratica]
15 Hb_002963_010 0.1134978964 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
16 Hb_014720_080 0.1146055706 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
17 Hb_000368_010 0.1159005938 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
18 Hb_002486_040 0.1168548899 - - -
19 Hb_008173_090 0.1169241342 - - glutathione peroxidase, putative [Ricinus communis]
20 Hb_000334_210 0.1181261951 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000987_120 Hb_000987_120 Hb_174865_030 Hb_174865_030 Hb_000987_120--Hb_174865_030 Hb_000307_090 Hb_000307_090 Hb_000987_120--Hb_000307_090 Hb_001722_100 Hb_001722_100 Hb_000987_120--Hb_001722_100 Hb_000522_080 Hb_000522_080 Hb_000987_120--Hb_000522_080 Hb_005736_060 Hb_005736_060 Hb_000987_120--Hb_005736_060 Hb_003185_080 Hb_003185_080 Hb_000987_120--Hb_003185_080 Hb_174865_030--Hb_001722_100 Hb_002540_030 Hb_002540_030 Hb_174865_030--Hb_002540_030 Hb_000446_030 Hb_000446_030 Hb_174865_030--Hb_000446_030 Hb_001235_190 Hb_001235_190 Hb_174865_030--Hb_001235_190 Hb_174865_030--Hb_000522_080 Hb_000307_090--Hb_005736_060 Hb_159809_020 Hb_159809_020 Hb_000307_090--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_000307_090--Hb_000926_300 Hb_000307_090--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_000307_090--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_000307_090--Hb_003599_040 Hb_014720_080 Hb_014720_080 Hb_001722_100--Hb_014720_080 Hb_001722_100--Hb_001235_190 Hb_001722_100--Hb_002963_010 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_000834_270 Hb_000834_270 Hb_001722_100--Hb_000834_270 Hb_008173_090 Hb_008173_090 Hb_001722_100--Hb_008173_090 Hb_004242_080 Hb_004242_080 Hb_000522_080--Hb_004242_080 Hb_000522_080--Hb_001722_100 Hb_021650_030 Hb_021650_030 Hb_000522_080--Hb_021650_030 Hb_000522_080--Hb_014720_080 Hb_000091_090 Hb_000091_090 Hb_000522_080--Hb_000091_090 Hb_004223_280 Hb_004223_280 Hb_000522_080--Hb_004223_280 Hb_005736_060--Hb_159809_020 Hb_001421_060 Hb_001421_060 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_001616_040 Hb_001616_040 Hb_005736_060--Hb_001616_040 Hb_005736_060--Hb_002963_010 Hb_006198_110 Hb_006198_110 Hb_003185_080--Hb_006198_110 Hb_000656_400 Hb_000656_400 Hb_003185_080--Hb_000656_400 Hb_003749_010 Hb_003749_010 Hb_003185_080--Hb_003749_010 Hb_004117_010 Hb_004117_010 Hb_003185_080--Hb_004117_010 Hb_003185_080--Hb_001235_190 Hb_028995_040 Hb_028995_040 Hb_003185_080--Hb_028995_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00872 4.79219 1.5875 2.87699 5.20766 4.59567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1098 12.0708 4.56019 4.0249 1.89196

CAGE analysis