Hb_174865_030

Information

Type -
Description -
Location Contig174865: 33959-36140
Sequence    

Annotation

kegg
ID rcu:RCOM_0482850
description hypothetical protein
nr
ID XP_010029994.1
description PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059ASY3
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16641: 33978-36060 , PASA_asmbl_16642: 34606-46462 , PASA_asmbl_16645: 35917-36095 , PASA_asmbl_16646: 34895-35142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174865_030 0.0 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
2 Hb_000987_120 0.0849668135 - - PREDICTED: protein SIEL [Jatropha curcas]
3 Hb_001722_100 0.0942943137 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002540_030 0.1070660713 - - hypothetical protein 32 [Hevea brasiliensis]
5 Hb_000446_030 0.1092259613 - - amino acid binding protein, putative [Ricinus communis]
6 Hb_001235_190 0.1098148735 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
7 Hb_000522_080 0.1098569998 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
8 Hb_004109_020 0.111379107 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
9 Hb_001300_270 0.1119744619 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
10 Hb_029866_060 0.1139759646 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
11 Hb_008173_090 0.1149281241 - - glutathione peroxidase, putative [Ricinus communis]
12 Hb_014720_080 0.1166841687 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
13 Hb_001538_100 0.1175808459 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
14 Hb_003893_090 0.1185096812 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
15 Hb_007317_150 0.1187921786 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
16 Hb_000368_010 0.1197662416 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
17 Hb_010172_070 0.1228915708 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
18 Hb_000086_060 0.1242906027 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
19 Hb_003656_070 0.1266803787 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
20 Hb_000307_090 0.1270706667 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]

Gene co-expression network

sample Hb_174865_030 Hb_174865_030 Hb_000987_120 Hb_000987_120 Hb_174865_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_174865_030--Hb_001722_100 Hb_002540_030 Hb_002540_030 Hb_174865_030--Hb_002540_030 Hb_000446_030 Hb_000446_030 Hb_174865_030--Hb_000446_030 Hb_001235_190 Hb_001235_190 Hb_174865_030--Hb_001235_190 Hb_000522_080 Hb_000522_080 Hb_174865_030--Hb_000522_080 Hb_000307_090 Hb_000307_090 Hb_000987_120--Hb_000307_090 Hb_000987_120--Hb_001722_100 Hb_000987_120--Hb_000522_080 Hb_005736_060 Hb_005736_060 Hb_000987_120--Hb_005736_060 Hb_003185_080 Hb_003185_080 Hb_000987_120--Hb_003185_080 Hb_014720_080 Hb_014720_080 Hb_001722_100--Hb_014720_080 Hb_001722_100--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_001722_100--Hb_002963_010 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_000834_270 Hb_000834_270 Hb_001722_100--Hb_000834_270 Hb_008173_090 Hb_008173_090 Hb_001722_100--Hb_008173_090 Hb_002540_030--Hb_014720_080 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_000025_120 Hb_000025_120 Hb_000446_030--Hb_000025_120 Hb_000446_030--Hb_000987_120 Hb_000446_030--Hb_001722_100 Hb_000696_340 Hb_000696_340 Hb_000446_030--Hb_000696_340 Hb_000221_150 Hb_000221_150 Hb_000446_030--Hb_000221_150 Hb_001235_190--Hb_008173_090 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_004242_080 Hb_004242_080 Hb_000522_080--Hb_004242_080 Hb_000522_080--Hb_001722_100 Hb_021650_030 Hb_021650_030 Hb_000522_080--Hb_021650_030 Hb_000522_080--Hb_014720_080 Hb_000091_090 Hb_000091_090 Hb_000522_080--Hb_000091_090 Hb_004223_280 Hb_004223_280 Hb_000522_080--Hb_004223_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1876 19.4522 9.63474 7.45383 15.0643 15.169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.2347 49.1215 22.5097 14.7055 3.31242

CAGE analysis