Hb_000696_340

Information

Type -
Description -
Location Contig696: 237052-242018
Sequence    

Annotation

kegg
ID cit:102625430
description hypothetical protein
nr
ID XP_012088661.1
description PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23055 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105647255

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54610: 236994-242032
cDNA
(Sanger)
(ID:Location)		 007_I14.ab1: 237161-241948 , 023_F01.ab1: 241493-241948 , 024_H22.ab1: 237269-242030 , 027_I20.ab1: 237321-242030 , 027_J15.ab1: 237265-242011 , 035_M16.ab1: 237222-242032 , 052_G24.ab1: 237222-242011 , 053_G11.ab1: 237097-241905

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_340 0.0 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
2 Hb_000221_210 0.0604922947 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
3 Hb_002137_020 0.0822842071 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_005329_020 0.0856098155 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
5 Hb_000329_630 0.0926092172 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
6 Hb_004223_280 0.0950118539 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
7 Hb_012022_030 0.0954644465 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
8 Hb_000395_080 0.0963895406 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
9 Hb_007441_230 0.0975502977 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
10 Hb_003050_220 0.0975573511 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
11 Hb_000010_460 0.097959305 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
12 Hb_031421_020 0.099900696 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
13 Hb_000638_080 0.1004417271 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
14 Hb_000522_080 0.1009885304 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
15 Hb_000329_650 0.1019289876 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
16 Hb_005056_060 0.1050735753 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
17 Hb_000877_060 0.1056254425 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
18 Hb_000340_260 0.105966131 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
19 Hb_014720_080 0.1068752475 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
20 Hb_000446_030 0.1076517009 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000696_340 Hb_000696_340 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_002137_020 Hb_002137_020 Hb_000696_340--Hb_002137_020 Hb_005329_020 Hb_005329_020 Hb_000696_340--Hb_005329_020 Hb_000329_630 Hb_000329_630 Hb_000696_340--Hb_000329_630 Hb_004223_280 Hb_004223_280 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_000086_060 Hb_000086_060 Hb_000221_210--Hb_000086_060 Hb_000445_180 Hb_000445_180 Hb_000221_210--Hb_000445_180 Hb_000221_210--Hb_002137_020 Hb_005941_040 Hb_005941_040 Hb_000221_210--Hb_005941_040 Hb_003057_100 Hb_003057_100 Hb_000221_210--Hb_003057_100 Hb_002137_020--Hb_004223_280 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_000571_120 Hb_000571_120 Hb_002137_020--Hb_000571_120 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_005329_020--Hb_000329_630 Hb_005329_020--Hb_000571_120 Hb_000395_080 Hb_000395_080 Hb_005329_020--Hb_000395_080 Hb_005056_060 Hb_005056_060 Hb_005329_020--Hb_005056_060 Hb_000877_060 Hb_000877_060 Hb_005329_020--Hb_000877_060 Hb_005054_290 Hb_005054_290 Hb_000329_630--Hb_005054_290 Hb_001439_100 Hb_001439_100 Hb_000329_630--Hb_001439_100 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650 Hb_000000_460 Hb_000000_460 Hb_000329_630--Hb_000000_460 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_039946_020 Hb_039946_020 Hb_012022_030--Hb_039946_020 Hb_012022_030--Hb_004223_280 Hb_012022_030--Hb_000613_140 Hb_012022_030--Hb_000877_060 Hb_012022_030--Hb_000571_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
252.354 193.73 78.1576 94.0578 210.301 252.316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
568.848 319.068 292.188 235.97 123.047

CAGE analysis