Hb_000329_650

Information

Type -
Description -
Location Contig329: 489673-491429
Sequence    

Annotation

kegg
ID pop:POPTR_0014s056001
description hypothetical protein
nr
ID XP_006375246.1
description hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FPF5
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s056001g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_650 0.0 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
2 Hb_000329_630 0.0905709969 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
3 Hb_000923_050 0.0975014453 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
4 Hb_000696_340 0.1019289876 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
5 Hb_005329_020 0.1089135066 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
6 Hb_005056_060 0.115250168 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
7 Hb_002333_080 0.1193369013 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
8 Hb_000395_080 0.1207611751 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
9 Hb_012022_030 0.1213698961 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
10 Hb_001439_100 0.1232636285 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
11 Hb_000446_030 0.1267874717 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_031421_020 0.1269864461 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
13 Hb_000230_270 0.1273701237 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
14 Hb_000221_210 0.1273758676 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
15 Hb_000317_410 0.1280552826 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
16 Hb_006788_020 0.130264774 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
17 Hb_005054_290 0.1313503033 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
18 Hb_006111_080 0.1319817232 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
19 Hb_001472_120 0.1329826217 - - -
20 Hb_011828_020 0.13372822 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_650 Hb_000329_650 Hb_000329_630 Hb_000329_630 Hb_000329_650--Hb_000329_630 Hb_000923_050 Hb_000923_050 Hb_000329_650--Hb_000923_050 Hb_000696_340 Hb_000696_340 Hb_000329_650--Hb_000696_340 Hb_005329_020 Hb_005329_020 Hb_000329_650--Hb_005329_020 Hb_005056_060 Hb_005056_060 Hb_000329_650--Hb_005056_060 Hb_002333_080 Hb_002333_080 Hb_000329_650--Hb_002333_080 Hb_005054_290 Hb_005054_290 Hb_000329_630--Hb_005054_290 Hb_001439_100 Hb_001439_100 Hb_000329_630--Hb_001439_100 Hb_000571_120 Hb_000571_120 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000000_460 Hb_000000_460 Hb_000329_630--Hb_000000_460 Hb_011828_020 Hb_011828_020 Hb_000923_050--Hb_011828_020 Hb_000395_080 Hb_000395_080 Hb_000923_050--Hb_000395_080 Hb_007441_230 Hb_007441_230 Hb_000923_050--Hb_007441_230 Hb_000923_050--Hb_000696_340 Hb_000923_050--Hb_002333_080 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_002137_020 Hb_002137_020 Hb_000696_340--Hb_002137_020 Hb_000696_340--Hb_005329_020 Hb_000696_340--Hb_000329_630 Hb_004223_280 Hb_004223_280 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_005329_020--Hb_000329_630 Hb_005329_020--Hb_000571_120 Hb_005329_020--Hb_000395_080 Hb_005329_020--Hb_005056_060 Hb_000877_060 Hb_000877_060 Hb_005329_020--Hb_000877_060 Hb_004108_080 Hb_004108_080 Hb_005056_060--Hb_004108_080 Hb_000567_030 Hb_000567_030 Hb_005056_060--Hb_000567_030 Hb_005056_060--Hb_000395_080 Hb_004310_030 Hb_004310_030 Hb_005056_060--Hb_004310_030 Hb_007254_040 Hb_007254_040 Hb_005056_060--Hb_007254_040 Hb_000500_090 Hb_000500_090 Hb_002333_080--Hb_000500_090 Hb_004970_110 Hb_004970_110 Hb_002333_080--Hb_004970_110 Hb_003120_030 Hb_003120_030 Hb_002333_080--Hb_003120_030 Hb_001329_220 Hb_001329_220 Hb_002333_080--Hb_001329_220 Hb_007317_180 Hb_007317_180 Hb_002333_080--Hb_007317_180 Hb_002333_080--Hb_011828_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.3736 35.9176 12.0929 14.5717 18.6669 41.9271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.7209 44.9936 35.1197 58.2925 14.4411

CAGE analysis